RNA–Protein interactions for RNA: ENST00000359422.8

LMBR1-202, Transcript of limb development membrane protein 1, humanhuman

TSL 5 BASIC

Gene LMBR1, Length 4,727 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-202ENST00000359422 DCAF8L2P0C7V8 631 aa28.4■■■□□ 2.14
LMBR1-202ENST00000359422 SUPT5HO00267 1087 aaKnown RBP27.01■■□□□ 1.91
LMBR1-202ENST00000359422 NISCHQ9Y2I1 1504 aa26.36■■□□□ 1.81
LMBR1-202ENST00000359422 SHROOM4Q9ULL8 1493 aa26.35■■□□□ 1.81
LMBR1-202ENST00000359422 EHMT2Q96KQ7 1210 aa26.23■■□□□ 1.79
LMBR1-202ENST00000359422 APLP2Q06481 763 aa25.67■■□□□ 1.7
LMBR1-202ENST00000359422 PELP1Q8IZL8 1130 aaKnown RBP25.66■■□□□ 1.7
LMBR1-202ENST00000359422 FAM9AQ8IZU1 332 aaPredicted RBP25.54■■□□□ 1.68
LMBR1-202ENST00000359422 TTBK1Q5TCY1 1321 aaPredicted RBP25.35■■□□□ 1.65
LMBR1-202ENST00000359422 PCGF6Q9BYE7 350 aa25.31■■□□□ 1.64
LMBR1-202ENST00000359422 RANGAP1P46060 587 aaPredicted RBP25.05■■□□□ 1.6
LMBR1-202ENST00000359422 TRIM41Q8WV44 630 aa24.93■■□□□ 1.58
LMBR1-202ENST00000359422 CCER1Q8TC90 406 aaPredicted RBP24.86■■□□□ 1.57
LMBR1-202ENST00000359422 CENPBP07199 599 aaPredicted RBP24.83■■□□□ 1.57
LMBR1-202ENST00000359422 ATP1B4Q9UN42 357 aaPredicted RBP24.8■■□□□ 1.56
LMBR1-202ENST00000359422 ZEB1P37275 1124 aaPredicted RBP24.77■■□□□ 1.56
LMBR1-202ENST00000359422 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
LMBR1-202ENST00000359422 ERICH6Q7L0X2 663 aa24.62■■□□□ 1.53
LMBR1-202ENST00000359422 PPARGC1BQ86YN6 1023 aaKnown RBP24.38■■□□□ 1.49
LMBR1-202ENST00000359422 YTHDC1Q96MU7 727 aaKnown RBP24.37■■□□□ 1.49
LMBR1-202ENST00000359422 NEFLP07196 543 aa24.34■■□□□ 1.49
LMBR1-202ENST00000359422 TRIM26Q12899 539 aaPredicted RBP24.09■■□□□ 1.45
LMBR1-202ENST00000359422 ITGAEP38570 1179 aa24.01■■□□□ 1.43
LMBR1-202ENST00000359422 LOC105371045A0A1W2PR82 267 aa23.92■■□□□ 1.42
LMBR1-202ENST00000359422 HRCP23327 699 aa23.9■■□□□ 1.42
LMBR1-202ENST00000359422 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.89■■□□□ 1.42
LMBR1-202ENST00000359422 HNRNPUL2Q1KMD3 747 aaKnown RBP23.89■■□□□ 1.42
LMBR1-202ENST00000359422 POLR3GLQ9BT43 218 aa23.85■■□□□ 1.41
LMBR1-202ENST00000359422 MYT1LQ9UL68 1186 aa23.82■■□□□ 1.4
LMBR1-202ENST00000359422 CHIC1Q5VXU3 224 aa23.8■■□□□ 1.4
LMBR1-202ENST00000359422 MYT1Q01538 1121 aa23.71■■□□□ 1.39
LMBR1-202ENST00000359422 CNGB1Q14028 1251 aaPredicted RBP23.7■■□□□ 1.38
LMBR1-202ENST00000359422 DAXXQ9UER7 740 aaPredicted RBP23.63■■□□□ 1.37
LMBR1-202ENST00000359422 DIEXFQ68CQ4 756 aaKnown RBP23.35■■□□□ 1.33
LMBR1-202ENST00000359422 SLC4A1APQ9BWU0 796 aaKnown RBP23.35■■□□□ 1.33
LMBR1-202ENST00000359422 FAM50AQ14320 339 aaKnown RBP23.29■■□□□ 1.32
LMBR1-202ENST00000359422 CLSPNQ9HAW4 1339 aa23.2■■□□□ 1.3
LMBR1-202ENST00000359422 TRIM52Q96A61 297 aa23.18■■□□□ 1.3
LMBR1-202ENST00000359422 NEUROD1Q13562 356 aa23.14■■□□□ 1.3
LMBR1-202ENST00000359422 PABPN1Q86U42 306 aaKnown RBP eCLIP23.12■■□□□ 1.29
LMBR1-202ENST00000359422 RTL5Q5HYW3 569 aaPredicted RBP23.07■■□□□ 1.28
LMBR1-202ENST00000359422 ZNF316A6NFI3 1004 aaPredicted RBP23.05■■□□□ 1.28
LMBR1-202ENST00000359422 ZNF326Q5BKZ1 582 aaKnown RBP22.99■■□□□ 1.27
LMBR1-202ENST00000359422 BCANQ96GW7 911 aa22.96■■□□□ 1.27
LMBR1-202ENST00000359422 ABCC9O60706 1549 aa22.91■■□□□ 1.26
LMBR1-202ENST00000359422 ANP32CO43423 234 aa22.9■■□□□ 1.26
LMBR1-202ENST00000359422 GTF3C3Q9Y5Q9 886 aa22.89■■□□□ 1.25
LMBR1-202ENST00000359422 FBLN2P98095 1184 aa22.84■■□□□ 1.25
LMBR1-202ENST00000359422 P3H3Q8IVL6 736 aa22.73■■□□□ 1.23
LMBR1-202ENST00000359422 CDK11AQ9UQ88 783 aaPredicted RBP22.72■■□□□ 1.23
LMBR1-202ENST00000359422 ARID3CA6NKF2 412 aa22.69■■□□□ 1.22
LMBR1-202ENST00000359422 ZBTB47Q9UFB7 747 aaPredicted RBP22.69■■□□□ 1.22
LMBR1-202ENST00000359422 CSRNP3Q8WYN3 585 aa22.68■■□□□ 1.22
LMBR1-202ENST00000359422 BCL11AQ9H165 835 aa22.63■■□□□ 1.21
LMBR1-202ENST00000359422 CANXP27824 592 aaKnown RBP22.58■■□□□ 1.2
LMBR1-202ENST00000359422 SLC24A1O60721 1099 aa22.57■■□□□ 1.2
LMBR1-202ENST00000359422 ZNF777Q9ULD5 760 aaPredicted RBP22.53■■□□□ 1.2
LMBR1-202ENST00000359422 NEFMP07197 916 aa22.51■■□□□ 1.19
LMBR1-202ENST00000359422 ACIN1Q9UKV3 1341 aaKnown RBP22.49■■□□□ 1.19
LMBR1-202ENST00000359422 ANP32AP39687 249 aaKnown RBP22.35■■□□□ 1.17
LMBR1-202ENST00000359422 NPM2Q86SE8 214 aaKnown RBP22.3■■□□□ 1.16
LMBR1-202ENST00000359422 TONSLQ96HA7 1378 aa22.29■■□□□ 1.16
LMBR1-202ENST00000359422 FKBP8Q14318 412 aa22.26■■□□□ 1.15
LMBR1-202ENST00000359422 DDX10Q13206 875 aaKnown RBP22.26■■□□□ 1.15
LMBR1-202ENST00000359422 CHGAP10645 457 aaKnown RBP22.25■■□□□ 1.15
LMBR1-202ENST00000359422 HNRNPUQ00839 825 aaKnown RBP eCLIP22.25■■□□□ 1.15
LMBR1-202ENST00000359422 FAM9BQ8IZU0 186 aa22.21■■□□□ 1.15
LMBR1-202ENST00000359422 ESF1Q9H501 851 aaKnown RBP22.19■■□□□ 1.14
LMBR1-202ENST00000359422 SALL2Q9Y467 1007 aaPredicted RBP22.18■■□□□ 1.14
LMBR1-202ENST00000359422 STAG3Q9UJ98 1225 aa22.14■■□□□ 1.13
LMBR1-202ENST00000359422 CHIC2Q9UKJ5 165 aa22.14■■□□□ 1.13
LMBR1-202ENST00000359422 HSP90AA1P07900 732 aaKnown RBP22.08■■□□□ 1.13
LMBR1-202ENST00000359422 TMC1Q8TDI8 760 aa22.07■■□□□ 1.12
LMBR1-202ENST00000359422 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.05■■□□□ 1.121e-6■■□□□ 12
LMBR1-202ENST00000359422 NPM1P06748 294 aaKnown RBP eCLIP22.04■■□□□ 1.12
LMBR1-202ENST00000359422 PLPPR3Q6T4P5 718 aa22.03■■□□□ 1.12
LMBR1-202ENST00000359422 UPF2Q9HAU5 1272 aaKnown RBP22.02■■□□□ 1.12
LMBR1-202ENST00000359422 SCRIBQ14160 1630 aa22.02■■□□□ 1.12
LMBR1-202ENST00000359422 CCDC136Q96JN2 1154 aa22■■□□□ 1.11
LMBR1-202ENST00000359422 TSPY4P0CV99 314 aa21.98■■□□□ 1.11
LMBR1-202ENST00000359422 TSPY10P0CW01 314 aa21.98■■□□□ 1.11
LMBR1-202ENST00000359422 KDM2AQ9Y2K7 1162 aa21.97■■□□□ 1.11
LMBR1-202ENST00000359422 ANP32BQ92688 251 aaKnown RBP21.97■■□□□ 1.11
LMBR1-202ENST00000359422 MRS2Q9HD23 443 aa21.97■■□□□ 1.11
LMBR1-202ENST00000359422 DCAF1Q9Y4B6 1507 aa21.94■■□□□ 1.1
LMBR1-202ENST00000359422 EIF5BO60841 1220 aaKnown RBP21.92■■□□□ 1.1
LMBR1-202ENST00000359422 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.92■■□□□ 1.1
LMBR1-202ENST00000359422 HIRIP3Q9BW71 556 aaPredicted RBP21.92■■□□□ 1.1
LMBR1-202ENST00000359422 WDR43Q15061 677 aaKnown RBP eCLIP21.89■■□□□ 1.1
LMBR1-202ENST00000359422 MTUS2Q5JR59 1369 aa21.89■■□□□ 1.09
LMBR1-202ENST00000359422 MIER1Q8N108 512 aa21.87■■□□□ 1.09
LMBR1-202ENST00000359422 IRX6P78412 446 aaPredicted RBP21.82■■□□□ 1.08
LMBR1-202ENST00000359422 NBR1Q14596 966 aa21.79■■□□□ 1.08
LMBR1-202ENST00000359422 EIF4G2P78344 907 aaKnown RBP eCLIP21.78■■□□□ 1.08
LMBR1-202ENST00000359422 RRP7BPQ9NSQ0 103 aa21.78■■□□□ 1.08
LMBR1-202ENST00000359422 CHMP7Q8WUX9 453 aaPredicted RBP21.77■■□□□ 1.07
LMBR1-202ENST00000359422 CLIP1P30622 1438 aa21.76■■□□□ 1.07
LMBR1-202ENST00000359422 ARXQ96QS3 562 aa21.73■■□□□ 1.07
LMBR1-202ENST00000359422 ZCCHC6Q5VYS8 1495 aaKnown RBP21.71■■□□□ 1.07
LMBR1-202ENST00000359422 SENP3Q9H4L4 574 aaPredicted RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms