RNA–Protein interactions for RNA: ENST00000461469.5

LMBR1-214, Transcript of limb development membrane protein 1, humanhuman

TSL 3

Gene LMBR1, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-214ENST00000461469 NISCHQ9Y2I1 1504 aa58.48■■■■■ 6.95
LMBR1-214ENST00000461469 CCDC180Q9P1Z9 1646 aa52.2■■■■■ 5.95
LMBR1-214ENST00000461469 ABCC9O60706 1549 aa51.66■■■■■ 5.86
LMBR1-214ENST00000461469 RB1CC1Q8TDY2 1594 aa49.35■■■■■ 5.49
LMBR1-214ENST00000461469 NACADO15069 1562 aa49.16■■■■■ 5.46
LMBR1-214ENST00000461469 DCAF8L2P0C7V8 631 aa49.01■■■■■ 5.44
LMBR1-214ENST00000461469 MYO15BQ96JP2 1530 aa48.68■■■■■ 5.38
LMBR1-214ENST00000461469 ZCCHC6Q5VYS8 1495 aaKnown RBP48.61■■■■■ 5.37
LMBR1-214ENST00000461469 UNC13AQ9UPW8 1703 aa48.45■■■■■ 5.35
LMBR1-214ENST00000461469 DCAF1Q9Y4B6 1507 aa48.29■■■■■ 5.32
LMBR1-214ENST00000461469 PABPN1Q86U42 306 aaKnown RBP eCLIP48.19■■■■■ 5.3
LMBR1-214ENST00000461469 BICRAQ9NZM4 1560 aa48.05■■■■■ 5.28
LMBR1-214ENST00000461469 DNAJC5BQ9UF47 199 aa48.01■■■■■ 5.28
LMBR1-214ENST00000461469 SCRIBQ14160 1630 aa47.67■■■■■ 5.22
LMBR1-214ENST00000461469 SHROOM4Q9ULL8 1493 aa47.24■■■■■ 5.15
LMBR1-214ENST00000461469 EIF4G1Q04637 1599 aaKnown RBP46.74■■■■■ 5.07
LMBR1-214ENST00000461469 CC2D2AQ9P2K1 1620 aa46.71■■■■■ 5.07
LMBR1-214ENST00000461469 CECR2Q9BXF3 1484 aa46.42■■■■■ 5.02
LMBR1-214ENST00000461469 SMARCA4P51532 1647 aa45.52■■■■■ 4.88
LMBR1-214ENST00000461469 NCAPD3P42695 1498 aa45.4■■■■■ 4.86
LMBR1-214ENST00000461469 ATAD2BQ9ULI0 1458 aa45.38■■■■■ 4.86
LMBR1-214ENST00000461469 BAZ1AQ9NRL2 1556 aaPredicted RBP45.31■■■■■ 4.84
LMBR1-214ENST00000461469 SMARCA2P51531 1590 aa45.22■■■■■ 4.83
LMBR1-214ENST00000461469 MROH2BQ7Z745 1585 aa45.14■■■■■ 4.82
LMBR1-214ENST00000461469 HMGXB3Q12766 1538 aa45.12■■■■■ 4.81
LMBR1-214ENST00000461469 PEG3Q9GZU2 1588 aa45.05■■■■■ 4.8
LMBR1-214ENST00000461469 BAZ1BQ9UIG0 1483 aaKnown RBP44.93■■■■■ 4.78
LMBR1-214ENST00000461469 WIZO95785 1651 aa44.64■■■■■ 4.74
LMBR1-214ENST00000461469 NESP48681 1621 aa44.61■■■■■ 4.73
LMBR1-214ENST00000461469 ERCC6Q03468 1493 aa44.45■■■■■ 4.71
LMBR1-214ENST00000461469 RSF1Q96T23 1441 aaPredicted RBP44.37■■■■■ 4.69
LMBR1-214ENST00000461469 LAMC3Q9Y6N6 1575 aa44.27■■■■■ 4.68
LMBR1-214ENST00000461469 CUX2O14529 1486 aa44.17■■■■■ 4.66
LMBR1-214ENST00000461469 KIF21AQ7Z4S6 1674 aa44.06■■■■■ 4.64
LMBR1-214ENST00000461469 TOP2AP11388 1531 aaKnown RBP44.04■■■■■ 4.64
LMBR1-214ENST00000461469 CADPSQ9ULU8 1353 aa44.03■■■■■ 4.64
LMBR1-214ENST00000461469 THOC2Q8NI27 1593 aaKnown RBP44.02■■■■■ 4.64
LMBR1-214ENST00000461469 PDS5BQ9NTI5 1447 aa43.92■■■■■ 4.62
LMBR1-214ENST00000461469 CFTRP13569 1480 aa43.69■■■■■ 4.58
LMBR1-214ENST00000461469 MRC2Q9UBG0 1479 aa43.59■■■■■ 4.57
LMBR1-214ENST00000461469 CCDC88BA6NC98 1476 aa43.56■■■■■ 4.56
LMBR1-214ENST00000461469 FANCD2Q9BXW9 1451 aa43.56■■■■■ 4.56
LMBR1-214ENST00000461469 CEP164Q9UPV0 1460 aa43.51■■■■■ 4.56
LMBR1-214ENST00000461469 WDR62O43379 1518 aa43.5■■■■■ 4.55
LMBR1-214ENST00000461469 DNAJC5Q9H3Z4 198 aa43.49■■■■■ 4.55
LMBR1-214ENST00000461469 PRDM2Q13029 1718 aa43.36■■■■■ 4.53
LMBR1-214ENST00000461469 URB2Q14146 1524 aaKnown RBP43.23■■■■■ 4.51
LMBR1-214ENST00000461469 TOPBP1Q92547 1522 aa42.84■■■■■ 4.45
LMBR1-214ENST00000461469 SUPT5HO00267 1087 aaKnown RBP42.81■■■■■ 4.44
LMBR1-214ENST00000461469 DNMBPQ6XZF7 1577 aa42.71■■■■■ 4.43
LMBR1-214ENST00000461469 ABCC8Q09428 1581 aa42.64■■■■■ 4.42
LMBR1-214ENST00000461469 IFT140Q96RY7 1462 aa42.62■■■■■ 4.41
LMBR1-214ENST00000461469 ZNF608Q9ULD9 1512 aaPredicted RBP42.61■■■■■ 4.41
LMBR1-214ENST00000461469 TARBP1Q13395 1621 aaKnown RBP42.46■■■■■ 4.39
LMBR1-214ENST00000461469 POLA1P09884 1462 aaPredicted RBP42.43■■■■■ 4.38
LMBR1-214ENST00000461469 EIF4G3O43432 1585 aaKnown RBP42.39■■■■■ 4.38
LMBR1-214ENST00000461469 CUX1P39880 1505 aa42.36■■■■■ 4.37
LMBR1-214ENST00000461469 RAD54L2Q9Y4B4 1467 aa42.31■■■■■ 4.36
LMBR1-214ENST00000461469 AQRO60306 1485 aaKnown RBP eCLIP42.26■■■■■ 4.365e-8■■□□□ 13.4
LMBR1-214ENST00000461469 FGD5Q6ZNL6 1462 aa42.26■■■■■ 4.36
LMBR1-214ENST00000461469 OSCARQ8IYS5 282 aa42.21■■■■■ 4.35
LMBR1-214ENST00000461469 SOGA1O94964 1423 aa42.2■■■■■ 4.35
LMBR1-214ENST00000461469 TDRD9Q8NDG6 1382 aaKnown RBP42.08■■■■■ 4.33
LMBR1-214ENST00000461469 WDR97A6NE52 1622 aa42■■■■■ 4.31
LMBR1-214ENST00000461469 CHD1O14646 1710 aa42■■■■■ 4.31
LMBR1-214ENST00000461469 SYNJ1O43426 1573 aa41.84■■■■■ 4.29
LMBR1-214ENST00000461469 SNAPC4Q5SXM2 1469 aa41.84■■■■■ 4.29
LMBR1-214ENST00000461469 TRIM41Q8WV44 630 aa41.83■■■■■ 4.29
LMBR1-214ENST00000461469 BIVM-ERCC5R4GMW8 1640 aa41.83■■■■■ 4.29
LMBR1-214ENST00000461469 TOP2BQ02880 1626 aa41.8■■■■■ 4.28
LMBR1-214ENST00000461469 WRNQ14191 1432 aaPredicted RBP eCLIP41.79■■■■■ 4.282e-6■■■■■ 59.6
LMBR1-214ENST00000461469 ABCA10Q8WWZ4 1543 aa41.79■■■■■ 4.28
LMBR1-214ENST00000461469 RIMBP3CA6NJZ7 1639 aa41.76■■■■■ 4.28
LMBR1-214ENST00000461469 RIMBP3BA6NNM3 1639 aa41.76■■■■■ 4.28
LMBR1-214ENST00000461469 RIMBP3Q9UFD9 1639 aa41.76■■■■■ 4.28
LMBR1-214ENST00000461469 GRIN2BQ13224 1484 aa41.75■■■■■ 4.27
LMBR1-214ENST00000461469 FBLN2P98095 1184 aa41.75■■■■■ 4.27
LMBR1-214ENST00000461469 PBRM1Q86U86 1689 aa41.74■■■■■ 4.27
LMBR1-214ENST00000461469 ABCA5Q8WWZ7 1642 aa41.73■■■■■ 4.27
LMBR1-214ENST00000461469 GAPVD1Q14C86 1478 aa41.71■■■■■ 4.27
LMBR1-214ENST00000461469 MAGI1Q96QZ7 1491 aaPredicted RBP41.69■■■■■ 4.26
LMBR1-214ENST00000461469 ARHGEF11O15085 1522 aa41.65■■■■■ 4.26
LMBR1-214ENST00000461469 SYNJ2O15056 1496 aa41.55■■■■■ 4.24
LMBR1-214ENST00000461469 CHMP7Q8WUX9 453 aaPredicted RBP41.52■■■■■ 4.24
LMBR1-214ENST00000461469 CLASP1Q7Z460 1538 aa41.49■■■■■ 4.23
LMBR1-214ENST00000461469 ADAMTS12P58397 1594 aa41.36■■■■■ 4.21
LMBR1-214ENST00000461469 ARAP1Q96P48 1450 aa41.32■■■■■ 4.2
LMBR1-214ENST00000461469 GRIN2AQ12879 1464 aa41.25■■■■■ 4.19
LMBR1-214ENST00000461469 ERICH3Q5RHP9 1530 aa41.24■■■■■ 4.19
LMBR1-214ENST00000461469 CYB5RLQ6IPT4 315 aa41.24■■■■■ 4.19
LMBR1-214ENST00000461469 FHAD1B1AJZ9 1412 aa41.18■■■■■ 4.18
LMBR1-214ENST00000461469 CEP170Q5SW79 1584 aa41.16■■■■■ 4.18
LMBR1-214ENST00000461469 NUP160Q12769 1436 aa41.1■■■■■ 4.17
LMBR1-214ENST00000461469 ERCC6L2Q5T890 1561 aa40.99■■■■■ 4.15
LMBR1-214ENST00000461469 KIF27Q86VH2 1401 aa40.91■■■■■ 4.14
LMBR1-214ENST00000461469 SHROOM2Q13796 1616 aa40.9■■■■■ 4.14
LMBR1-214ENST00000461469 IGF1RP08069 1367 aa40.89■■■■■ 4.14
LMBR1-214ENST00000461469 CUL7Q14999 1698 aa40.78■■■■■ 4.12
LMBR1-214ENST00000461469 RUSC2Q8N2Y8 1516 aa40.77■■■■■ 4.12
LMBR1-214ENST00000461469 PRG4Q92954 1404 aaPredicted RBP40.63■■■■■ 4.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms