RNA–Protein interactions for RNA: ENST00000498034.5

LMBR1-219, Transcript of limb development membrane protein 1, humanhuman

TSL 3

Gene LMBR1, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-219ENST00000498034 NISCHQ9Y2I1 1504 aa50.55■■■■■ 5.68
LMBR1-219ENST00000498034 CCDC180Q9P1Z9 1646 aa45.19■■■■■ 4.83
LMBR1-219ENST00000498034 ABCC9O60706 1549 aa45.01■■■■■ 4.8
LMBR1-219ENST00000498034 RB1CC1Q8TDY2 1594 aa42.9■■■■■ 4.46
LMBR1-219ENST00000498034 NACADO15069 1562 aa42.68■■■■■ 4.42
LMBR1-219ENST00000498034 DCAF8L2P0C7V8 631 aa42.62■■■■■ 4.41
LMBR1-219ENST00000498034 MYO15BQ96JP2 1530 aa42.15■■■■■ 4.34
LMBR1-219ENST00000498034 DNAJC5BQ9UF47 199 aa42■■■■■ 4.31
LMBR1-219ENST00000498034 UNC13AQ9UPW8 1703 aa41.98■■■■■ 4.31
LMBR1-219ENST00000498034 PABPN1Q86U42 306 aaKnown RBP eCLIP41.97■■■■■ 4.31
LMBR1-219ENST00000498034 ZCCHC6Q5VYS8 1495 aaKnown RBP41.94■■■■■ 4.3
LMBR1-219ENST00000498034 DCAF1Q9Y4B6 1507 aa41.73■■■■■ 4.27
LMBR1-219ENST00000498034 BICRAQ9NZM4 1560 aa41.67■■■■■ 4.26
LMBR1-219ENST00000498034 SCRIBQ14160 1630 aa41.26■■■■■ 4.2
LMBR1-219ENST00000498034 SHROOM4Q9ULL8 1493 aa41.06■■■■■ 4.16
LMBR1-219ENST00000498034 CC2D2AQ9P2K1 1620 aa40.64■■■■■ 4.1
LMBR1-219ENST00000498034 EIF4G1Q04637 1599 aaKnown RBP40.61■■■■■ 4.09
LMBR1-219ENST00000498034 CECR2Q9BXF3 1484 aa40.48■■■■■ 4.07
LMBR1-219ENST00000498034 NCAPD3P42695 1498 aa39.41■■■■□ 3.9
LMBR1-219ENST00000498034 SMARCA4P51532 1647 aa39.37■■■■□ 3.89
LMBR1-219ENST00000498034 ATAD2BQ9ULI0 1458 aa39.35■■■■□ 3.89
LMBR1-219ENST00000498034 SMARCA2P51531 1590 aa39.22■■■■□ 3.87
LMBR1-219ENST00000498034 BAZ1AQ9NRL2 1556 aaPredicted RBP39.2■■■■□ 3.87
LMBR1-219ENST00000498034 HMGXB3Q12766 1538 aa39.12■■■■□ 3.85
LMBR1-219ENST00000498034 MROH2BQ7Z745 1585 aa38.98■■■■□ 3.83
LMBR1-219ENST00000498034 BAZ1BQ9UIG0 1483 aaKnown RBP38.98■■■■□ 3.83
LMBR1-219ENST00000498034 PEG3Q9GZU2 1588 aa38.95■■■■□ 3.83
LMBR1-219ENST00000498034 ERCC6Q03468 1493 aa38.8■■■■□ 3.8
LMBR1-219ENST00000498034 NESP48681 1621 aa38.75■■■■□ 3.79
LMBR1-219ENST00000498034 CUX2O14529 1486 aa38.61■■■■□ 3.77
LMBR1-219ENST00000498034 WIZO95785 1651 aa38.53■■■■□ 3.76
LMBR1-219ENST00000498034 LAMC3Q9Y6N6 1575 aa38.47■■■■□ 3.75
LMBR1-219ENST00000498034 DNAJC5Q9H3Z4 198 aa38.31■■■■□ 3.72
LMBR1-219ENST00000498034 RSF1Q96T23 1441 aaPredicted RBP38.27■■■■□ 3.72
LMBR1-219ENST00000498034 THOC2Q8NI27 1593 aaKnown RBP38.26■■■■□ 3.72
LMBR1-219ENST00000498034 KIF21AQ7Z4S6 1674 aa38.24■■■■□ 3.71
LMBR1-219ENST00000498034 PDS5BQ9NTI5 1447 aa38.24■■■■□ 3.71
LMBR1-219ENST00000498034 CADPSQ9ULU8 1353 aa38.23■■■■□ 3.71
LMBR1-219ENST00000498034 TOP2AP11388 1531 aaKnown RBP38.03■■■■□ 3.68
LMBR1-219ENST00000498034 MRC2Q9UBG0 1479 aa37.9■■■■□ 3.66
LMBR1-219ENST00000498034 CFTRP13569 1480 aa37.85■■■■□ 3.65
LMBR1-219ENST00000498034 FANCD2Q9BXW9 1451 aa37.81■■■■□ 3.64
LMBR1-219ENST00000498034 CEP164Q9UPV0 1460 aa37.81■■■■□ 3.64
LMBR1-219ENST00000498034 WDR62O43379 1518 aa37.79■■■■□ 3.64
LMBR1-219ENST00000498034 CCDC88BA6NC98 1476 aa37.63■■■■□ 3.61
LMBR1-219ENST00000498034 URB2Q14146 1524 aaKnown RBP37.49■■■■□ 3.59
LMBR1-219ENST00000498034 PRDM2Q13029 1718 aa37.48■■■■□ 3.59
LMBR1-219ENST00000498034 TOPBP1Q92547 1522 aa37.13■■■■□ 3.53
LMBR1-219ENST00000498034 IFT140Q96RY7 1462 aa37.04■■■■□ 3.52
LMBR1-219ENST00000498034 ABCC8Q09428 1581 aa37.03■■■■□ 3.52
LMBR1-219ENST00000498034 DNMBPQ6XZF7 1577 aa37■■■■□ 3.51
LMBR1-219ENST00000498034 ZNF608Q9ULD9 1512 aaPredicted RBP36.99■■■■□ 3.51
LMBR1-219ENST00000498034 OSCARQ8IYS5 282 aa36.94■■■■□ 3.5
LMBR1-219ENST00000498034 SUPT5HO00267 1087 aaKnown RBP36.85■■■■□ 3.49
LMBR1-219ENST00000498034 TRIM41Q8WV44 630 aa36.8■■■■□ 3.48
LMBR1-219ENST00000498034 EIF4G3O43432 1585 aaKnown RBP36.78■■■■□ 3.48
LMBR1-219ENST00000498034 TARBP1Q13395 1621 aaKnown RBP36.77■■■■□ 3.48
LMBR1-219ENST00000498034 POLA1P09884 1462 aaPredicted RBP36.76■■■■□ 3.48
LMBR1-219ENST00000498034 AQRO60306 1485 aaKnown RBP eCLIP36.69■■■■□ 3.465e-8■■□□□ 13.4
LMBR1-219ENST00000498034 RAD54L2Q9Y4B4 1467 aa36.66■■■■□ 3.46
LMBR1-219ENST00000498034 SOGA1O94964 1423 aa36.61■■■■□ 3.45
LMBR1-219ENST00000498034 CUX1P39880 1505 aa36.59■■■■□ 3.45
LMBR1-219ENST00000498034 FGD5Q6ZNL6 1462 aa36.58■■■■□ 3.45
LMBR1-219ENST00000498034 TDRD9Q8NDG6 1382 aaKnown RBP36.53■■■■□ 3.44
LMBR1-219ENST00000498034 CHD1O14646 1710 aa36.46■■■■□ 3.43
LMBR1-219ENST00000498034 RIMBP3CA6NJZ7 1639 aa36.43■■■■□ 3.42
LMBR1-219ENST00000498034 RIMBP3BA6NNM3 1639 aa36.43■■■■□ 3.42
LMBR1-219ENST00000498034 RIMBP3Q9UFD9 1639 aa36.43■■■■□ 3.42
LMBR1-219ENST00000498034 FBLN2P98095 1184 aa36.42■■■■□ 3.42
LMBR1-219ENST00000498034 WDR97A6NE52 1622 aa36.36■■■■□ 3.41
LMBR1-219ENST00000498034 ARHGEF11O15085 1522 aa36.34■■■■□ 3.41
LMBR1-219ENST00000498034 SNAPC4Q5SXM2 1469 aa36.31■■■■□ 3.4
LMBR1-219ENST00000498034 GRIN2BQ13224 1484 aa36.24■■■■□ 3.39
LMBR1-219ENST00000498034 MAGI1Q96QZ7 1491 aaPredicted RBP36.19■■■■□ 3.38
LMBR1-219ENST00000498034 CHMP7Q8WUX9 453 aaPredicted RBP36.17■■■■□ 3.38
LMBR1-219ENST00000498034 ABCA10Q8WWZ4 1543 aa36.16■■■■□ 3.38
LMBR1-219ENST00000498034 GAPVD1Q14C86 1478 aa36.16■■■■□ 3.38
LMBR1-219ENST00000498034 PBRM1Q86U86 1689 aa36.13■■■■□ 3.37
LMBR1-219ENST00000498034 CYB5RLQ6IPT4 315 aa36.09■■■■□ 3.37
LMBR1-219ENST00000498034 WRNQ14191 1432 aaPredicted RBP eCLIP36.08■■■■□ 3.372e-6■■■■■ 59.6
LMBR1-219ENST00000498034 ABCA5Q8WWZ7 1642 aa36.08■■■■□ 3.37
LMBR1-219ENST00000498034 SYNJ2O15056 1496 aa36.08■■■■□ 3.37
LMBR1-219ENST00000498034 BIVM-ERCC5R4GMW8 1640 aa36.07■■■■□ 3.36
LMBR1-219ENST00000498034 TOP2BQ02880 1626 aa36.06■■■■□ 3.36
LMBR1-219ENST00000498034 SYNJ1O43426 1573 aa36.06■■■■□ 3.36
LMBR1-219ENST00000498034 CLASP1Q7Z460 1538 aa36.03■■■■□ 3.36
LMBR1-219ENST00000498034 ARAP1Q96P48 1450 aa36■■■■□ 3.35
LMBR1-219ENST00000498034 ADAMTS12P58397 1594 aa35.79■■■■□ 3.32
LMBR1-219ENST00000498034 GRIN2AQ12879 1464 aa35.78■■■■□ 3.32
LMBR1-219ENST00000498034 FHAD1B1AJZ9 1412 aa35.71■■■■□ 3.31
LMBR1-219ENST00000498034 ERICH3Q5RHP9 1530 aa35.71■■■■□ 3.31
LMBR1-219ENST00000498034 CEP170Q5SW79 1584 aa35.65■■■■□ 3.3
LMBR1-219ENST00000498034 NUP160Q12769 1436 aa35.65■■■■□ 3.3
LMBR1-219ENST00000498034 TRHP20396 242 aaPredicted RBP35.6■■■■□ 3.29
LMBR1-219ENST00000498034 ERCC6L2Q5T890 1561 aa35.54■■■■□ 3.28
LMBR1-219ENST00000498034 SHROOM2Q13796 1616 aa35.45■■■■□ 3.27
LMBR1-219ENST00000498034 KIF27Q86VH2 1401 aa35.37■■■■□ 3.25
LMBR1-219ENST00000498034 IGF1RP08069 1367 aa35.35■■■■□ 3.25
LMBR1-219ENST00000498034 JPH4Q96JJ6 628 aa35.32■■■■□ 3.24
LMBR1-219ENST00000498034 PRG4Q92954 1404 aaPredicted RBP35.3■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms