RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	AEBP2	Q6ZN18	517 aa	Predicted RBP	24.16	■■□□□ 1.46
RBM39-231	ENST00000477334	CHIC1	Q5VXU3	224 aa		23.19	■■□□□ 1.3
RBM39-231	ENST00000477334	SENP3	Q9H4L4	574 aa	Predicted RBP	20.59	■□□□□ 0.89
RBM39-231	ENST00000477334	PHF23	Q9BUL5	403 aa	Predicted RBP	20.33	■□□□□ 0.85
RBM39-231	ENST00000477334	FOXD1	Q16676	465 aa		19.14	■□□□□ 0.65
RBM39-231	ENST00000477334	PLPPR3	Q6T4P5	718 aa		18.64	■□□□□ 0.57
RBM39-231	ENST00000477334	POTED	Q86YR6	584 aa		18.54	■□□□□ 0.56
RBM39-231	ENST00000477334	PPP6R1	Q9UPN7	881 aa		18.07	■□□□□ 0.48
RBM39-231	ENST00000477334	ADRA2B	P18089	450 aa		18.03	■□□□□ 0.48
RBM39-231	ENST00000477334	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.96	■□□□□ 0.47
RBM39-231	ENST00000477334	MSH5	O43196	834 aa		17.84	■□□□□ 0.45
RBM39-231	ENST00000477334	SCAF1	Q9H7N4	1312 aa	Known RBP	16.52	■□□□□ 0.24
RBM39-231	ENST00000477334	MAPK8IP2	Q13387	824 aa	Predicted RBP	16.47	■□□□□ 0.23
RBM39-231	ENST00000477334	PPP4R3CP	Q6ZMV5	832 aa		16.36	■□□□□ 0.21
RBM39-231	ENST00000477334	DMRT2	Q9Y5R5	561 aa		16.36	■□□□□ 0.21
RBM39-231	ENST00000477334	CNKSR2	Q8WXI2	1034 aa		16.01	■□□□□ 0.15
RBM39-231	ENST00000477334	HOXD11	P31277	338 aa	Predicted RBP	15.85	■□□□□ 0.13
RBM39-231	ENST00000477334	NCBP3	Q53F19	620 aa	Known RBP	15.82	■□□□□ 0.12
RBM39-231	ENST00000477334	RNF216	Q9NWF9	866 aa	Predicted RBP	15.8	■□□□□ 0.12
RBM39-231	ENST00000477334	DCAF8L1	A6NGE4	600 aa		15.65	■□□□□ 0.1
RBM39-231	ENST00000477334	NPM3	O75607	178 aa	Known RBP	15.58	■□□□□ 0.08
RBM39-231	ENST00000477334	KCNA4	P22459	653 aa		15.49	■□□□□ 0.07
RBM39-231	ENST00000477334	CACNB1	Q02641	598 aa	Predicted RBP	15.35	■□□□□ 0.05
RBM39-231	ENST00000477334	DNAJC5B	Q9UF47	199 aa		15.29	■□□□□ 0.04
RBM39-231	ENST00000477334	RNF39	Q9H2S5	420 aa		15.25	■□□□□ 0.03
RBM39-231	ENST00000477334	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	15.09	■□□□□ 0.01	7e-22	■■□□□ 11.8
RBM39-231	ENST00000477334	C1QBP	Q07021	282 aa	Known RBP	15.04	■□□□□ -0
RBM39-231	ENST00000477334	SLC4A2	P04920	1241 aa		14.81	□□□□□ -0.04
RBM39-231	ENST00000477334		U3KPZ7	1027 aa	Predicted RBP	14.81	□□□□□ -0.04
RBM39-231	ENST00000477334	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.68	□□□□□ -0.06
RBM39-231	ENST00000477334	SPINK5	Q9NQ38	1064 aa	Predicted RBP	14.51	□□□□□ -0.09
RBM39-231	ENST00000477334	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	14.5	□□□□□ -0.09
RBM39-231	ENST00000477334	HNRNPUL2	Q1KMD3	747 aa	Known RBP	14.5	□□□□□ -0.09
RBM39-231	ENST00000477334	CAPN15	O75808	1086 aa		14.48	□□□□□ -0.09
RBM39-231	ENST00000477334	APLP2	Q06481	763 aa		14.45	□□□□□ -0.1
RBM39-231	ENST00000477334	MYCN	P04198	464 aa	Predicted RBP	14.42	□□□□□ -0.1
RBM39-231	ENST00000477334	SAMD1	Q6SPF0	538 aa	Predicted RBP	14.42	□□□□□ -0.1
RBM39-231	ENST00000477334	FOXD4L1	Q9NU39	408 aa		14.39	□□□□□ -0.11
RBM39-231	ENST00000477334	DSG3	P32926	999 aa		14.35	□□□□□ -0.11
RBM39-231	ENST00000477334	POTEH	Q6S545	545 aa		14.34	□□□□□ -0.11
RBM39-231	ENST00000477334	ZNF219	Q9P2Y4	722 aa	Predicted RBP	14.32	□□□□□ -0.12
RBM39-231	ENST00000477334	TRH	P20396	242 aa	Predicted RBP	14.3	□□□□□ -0.12
RBM39-231	ENST00000477334	ZBTB22	O15209	634 aa		14.25	□□□□□ -0.13
RBM39-231	ENST00000477334	ABCB7	O75027	752 aa		14.16	□□□□□ -0.14
RBM39-231	ENST00000477334	EHMT2	Q96KQ7	1210 aa		14.15	□□□□□ -0.14
RBM39-231	ENST00000477334	ATF5	Q9Y2D1	282 aa	Predicted RBP	14.04	□□□□□ -0.16
RBM39-231	ENST00000477334	POLA2	Q14181	598 aa		13.98	□□□□□ -0.17
RBM39-231	ENST00000477334	ATXN8OS	P0DMR3	200 aa		13.94	□□□□□ -0.18
RBM39-231	ENST00000477334	CSRNP3	Q8WYN3	585 aa		13.86	□□□□□ -0.19
RBM39-231	ENST00000477334	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.75	□□□□□ -0.21
RBM39-231	ENST00000477334	RBM42	Q9BTD8	480 aa	Known RBP	13.7	□□□□□ -0.22
RBM39-231	ENST00000477334	OSCAR	Q8IYS5	282 aa		13.54	□□□□□ -0.24
RBM39-231	ENST00000477334	FBLN2	P98095	1184 aa		13.5	□□□□□ -0.25
RBM39-231	ENST00000477334	AKT1S1	Q96B36	256 aa		13.43	□□□□□ -0.26
RBM39-231	ENST00000477334	MKRN4P	Q13434	485 aa	Predicted RBP	13.42	□□□□□ -0.26
RBM39-231	ENST00000477334	SPDYE2B	A6NHP3	402 aa		13.33	□□□□□ -0.28
RBM39-231	ENST00000477334	SPDYE6	P0CI01	402 aa		13.33	□□□□□ -0.28
RBM39-231	ENST00000477334	SPDYE2	Q495Y8	402 aa		13.33	□□□□□ -0.28
RBM39-231	ENST00000477334	CHRDL2	Q6WN34	429 aa		13.29	□□□□□ -0.28
RBM39-231	ENST00000477334	REM2	Q8IYK8	340 aa	Predicted RBP	13.29	□□□□□ -0.28
RBM39-231	ENST00000477334	ZNF692	Q9BU19	519 aa	Predicted RBP	13.19	□□□□□ -0.3
RBM39-231	ENST00000477334	SSUH2	Q9Y2M2	353 aa		13.18	□□□□□ -0.3
RBM39-231	ENST00000477334	PITPNM1	O00562	1244 aa		13.15	□□□□□ -0.3
RBM39-231	ENST00000477334	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.04	□□□□□ -0.32
RBM39-231	ENST00000477334	PIP4P2	Q8N4L2	257 aa		13.03	□□□□□ -0.32
RBM39-231	ENST00000477334	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.01	□□□□□ -0.33
RBM39-231	ENST00000477334	FXR2	P51116	673 aa	Known RBP eCLIP	12.99	□□□□□ -0.33	7e-33	■■□□□ 11.8
RBM39-231	ENST00000477334	CLEC11A	Q9Y240	323 aa		12.98	□□□□□ -0.33
RBM39-231	ENST00000477334	SP7	Q8TDD2	431 aa	Predicted RBP	12.94	□□□□□ -0.34
RBM39-231	ENST00000477334	SPDYE4	A6NLX3	237 aa		12.91	□□□□□ -0.34
RBM39-231	ENST00000477334	PRR29	P0C7W0	189 aa		12.81	□□□□□ -0.36
RBM39-231	ENST00000477334	PRKAR2A	P13861	404 aa	Known RBP	12.81	□□□□□ -0.36
RBM39-231	ENST00000477334	STAG3	Q9UJ98	1225 aa		12.72	□□□□□ -0.37
RBM39-231	ENST00000477334	HAX1	O00165	279 aa		12.71	□□□□□ -0.37
RBM39-231	ENST00000477334	CHADL	Q6NUI6	762 aa		12.7	□□□□□ -0.38
RBM39-231	ENST00000477334	PROM2	Q8N271	834 aa		12.66	□□□□□ -0.38
RBM39-231	ENST00000477334	C19orf67	A6NJJ6	358 aa		12.56	□□□□□ -0.4
RBM39-231	ENST00000477334	EVX2	Q03828	476 aa		12.56	□□□□□ -0.4
RBM39-231	ENST00000477334	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.56	□□□□□ -0.4
RBM39-231	ENST00000477334	CREBZF	Q9NS37	354 aa		12.55	□□□□□ -0.4
RBM39-231	ENST00000477334	FKBP8	Q14318	412 aa		12.54	□□□□□ -0.4
RBM39-231	ENST00000477334	CD44	P16070	742 aa	Known RBP	12.42	□□□□□ -0.42
RBM39-231	ENST00000477334	MNX1	P50219	401 aa	Predicted RBP	12.38	□□□□□ -0.43
RBM39-231	ENST00000477334	NPM1	P06748	294 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
RBM39-231	ENST00000477334	GABBR2	O75899	941 aa		12.31	□□□□□ -0.44
RBM39-231	ENST00000477334	PLEKHG5	O94827	1062 aa		12.28	□□□□□ -0.44
RBM39-231	ENST00000477334	MIER1	Q8N108	512 aa		12.28	□□□□□ -0.44
RBM39-231	ENST00000477334	ZRANB1	Q9UGI0	708 aa		12.28	□□□□□ -0.44
RBM39-231	ENST00000477334	ZNF579	Q8NAF0	562 aa	Known RBP	12.26	□□□□□ -0.45
RBM39-231	ENST00000477334	PAK3	O75914	559 aa	Predicted RBP	12.25	□□□□□ -0.45
RBM39-231	ENST00000477334	CLCN6	P51797	869 aa		12.23	□□□□□ -0.45
RBM39-231	ENST00000477334	PLSCR2	Q9NRY7	297 aa		12.23	□□□□□ -0.45
RBM39-231	ENST00000477334	PLCD3	Q8N3E9	789 aa		12.22	□□□□□ -0.45
RBM39-231	ENST00000477334	FBXO3	Q9UK99	471 aa		12.2	□□□□□ -0.46
RBM39-231	ENST00000477334	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.14	□□□□□ -0.47
RBM39-231	ENST00000477334	PHF12	Q96QT6	1004 aa		12.12	□□□□□ -0.47
RBM39-231	ENST00000477334	LHX8	Q68G74	356 aa		12.11	□□□□□ -0.47
RBM39-231	ENST00000477334	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.1	□□□□□ -0.47
RBM39-231	ENST00000477334	GALR2	O43603	387 aa	Predicted RBP	12.07	□□□□□ -0.48
RBM39-231	ENST00000477334	RASEF	Q8IZ41	740 aa		12.07	□□□□□ -0.48

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