Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 MIR6724-1-201ENST00000616420 92 ntBASIC24.31■■□□□ 1.48
SOX9P48436 MIR6724-2-201ENST00000616483 92 ntBASIC24.31■■□□□ 1.48
SOX9P48436 MIR6724-4-201ENST00000617390 92 ntBASIC24.31■■□□□ 1.48
SOX9P48436 MIR6724-3-201ENST00000622482 92 ntBASIC24.31■■□□□ 1.48
SOX9P48436 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.3■■□□□ 1.48
SOX9P48436 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
SOX9P48436 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.3■■□□□ 1.48
SOX9P48436 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.29■■□□□ 1.48
SOX9P48436 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.29■■□□□ 1.48
SOX9P48436 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
SOX9P48436 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.29■■□□□ 1.48
SOX9P48436 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.29■■□□□ 1.48
SOX9P48436 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.29■■□□□ 1.48
SOX9P48436 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.29■■□□□ 1.48
SOX9P48436 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SOX9P48436 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SOX9P48436 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.28■■□□□ 1.48
SOX9P48436 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.28■■□□□ 1.48
SOX9P48436 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SOX9P48436 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
SOX9P48436 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SOX9P48436 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.28■■□□□ 1.48
SOX9P48436 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
SOX9P48436 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SOX9P48436 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SOX9P48436 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.27■■□□□ 1.48
SOX9P48436 MIR4466-201ENST00000606121 54 ntBASIC24.27■■□□□ 1.48
SOX9P48436 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
SOX9P48436 AC110285.6-201ENST00000617652 491 ntBASIC24.27■■□□□ 1.48
SOX9P48436 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SOX9P48436 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SOX9P48436 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.26■■□□□ 1.47
SOX9P48436 AC142086.6-201ENST00000621154 1765 ntBASIC24.26■■□□□ 1.47
SOX9P48436 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SOX9P48436 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.25■■□□□ 1.47
SOX9P48436 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.25■■□□□ 1.47
SOX9P48436 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.25■■□□□ 1.47
SOX9P48436 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.25■■□□□ 1.47
SOX9P48436 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.25■■□□□ 1.47
SOX9P48436 AL356740.2-201ENST00000601559 647 ntBASIC24.25■■□□□ 1.47
SOX9P48436 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SOX9P48436 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SOX9P48436 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SOX9P48436 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SOX9P48436 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.24■■□□□ 1.47
SOX9P48436 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SOX9P48436 AC096631.2-201ENST00000436136 790 ntBASIC24.23■■□□□ 1.47
SOX9P48436 AF131216.4-201ENST00000638924 1588 ntBASIC24.23■■□□□ 1.47
SOX9P48436 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SOX9P48436 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.23■■□□□ 1.47
SOX9P48436 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SOX9P48436 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.22■■□□□ 1.47
SOX9P48436 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.22■■□□□ 1.47
SOX9P48436 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
SOX9P48436 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SOX9P48436 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.21■■□□□ 1.47
SOX9P48436 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.21■■□□□ 1.47
SOX9P48436 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.21■■□□□ 1.47
SOX9P48436 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SOX9P48436 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.21■■□□□ 1.47
SOX9P48436 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SOX9P48436 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SOX9P48436 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.2■■□□□ 1.46
SOX9P48436 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SOX9P48436 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.2■■□□□ 1.46
SOX9P48436 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
SOX9P48436 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.2■■□□□ 1.46
SOX9P48436 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.2■■□□□ 1.46
SOX9P48436 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SOX9P48436 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SOX9P48436 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SOX9P48436 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SOX9P48436 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.18■■□□□ 1.46
SOX9P48436 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
SOX9P48436 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SOX9P48436 CD72-202ENST00000378430 585 ntTSL 3 BASIC24.18■■□□□ 1.46
SOX9P48436 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.18■■□□□ 1.46
SOX9P48436 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.18■■□□□ 1.46
SOX9P48436 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC24.18■■□□□ 1.46
SOX9P48436 AL512631.2-201ENST00000604634 923 ntBASIC24.18■■□□□ 1.46
SOX9P48436 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.18■■□□□ 1.46
SOX9P48436 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SOX9P48436 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
SOX9P48436 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.17■■□□□ 1.46
SOX9P48436 FOXO3B-201ENST00000395675 1928 ntBASIC24.17■■□□□ 1.46
SOX9P48436 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SOX9P48436 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.16■■□□□ 1.46
SOX9P48436 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
SOX9P48436 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SOX9P48436 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SOX9P48436 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.16■■□□□ 1.46
SOX9P48436 AC005837.3-201ENST00000612163 286 ntBASIC24.16■■□□□ 1.46
SOX9P48436 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SOX9P48436 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms