Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC31.82■■■□□ 2.68
RXRBP28702 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC31.82■■■□□ 2.68
RXRBP28702 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.81■■■□□ 2.68
RXRBP28702 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
RXRBP28702 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
RXRBP28702 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
RXRBP28702 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
RXRBP28702 AC004911.1-201ENST00000416316 871 ntBASIC31.81■■■□□ 2.68
RXRBP28702 KRT18P5-201ENST00000436075 1291 ntBASIC31.81■■■□□ 2.68
RXRBP28702 MIR4767-201ENST00000582827 78 ntBASIC31.81■■■□□ 2.68
RXRBP28702 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
RXRBP28702 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
RXRBP28702 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.81■■■□□ 2.68
RXRBP28702 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
RXRBP28702 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
RXRBP28702 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC31.8■■■□□ 2.68
RXRBP28702 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
RXRBP28702 DLX3-202ENST00000512495 834 ntTSL 2 BASIC31.8■■■□□ 2.68
RXRBP28702 SP2-202ENST00000613139 908 ntTSL 5 BASIC31.8■■■□□ 2.68
RXRBP28702 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
RXRBP28702 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
RXRBP28702 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
RXRBP28702 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC31.79■■■□□ 2.68
RXRBP28702 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RXRBP28702 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.78■■■□□ 2.68
RXRBP28702 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
RXRBP28702 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
RXRBP28702 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC31.78■■■□□ 2.68
RXRBP28702 RHOF-204ENST00000537265 699 ntTSL 2 BASIC31.78■■■□□ 2.68
RXRBP28702 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC31.78■■■□□ 2.68
RXRBP28702 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC31.78■■■□□ 2.68
RXRBP28702 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC31.78■■■□□ 2.68
RXRBP28702 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC31.77■■■□□ 2.68
RXRBP28702 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC31.77■■■□□ 2.68
RXRBP28702 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
RXRBP28702 AF131216.4-201ENST00000638924 1588 ntBASIC31.77■■■□□ 2.68
RXRBP28702 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC31.76■■■□□ 2.68
RXRBP28702 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.68
RXRBP28702 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
RXRBP28702 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.67
RXRBP28702 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.76■■■□□ 2.67
RXRBP28702 AC027682.1-201ENST00000562846 899 ntBASIC31.76■■■□□ 2.67
RXRBP28702 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC31.76■■■□□ 2.67
RXRBP28702 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.76■■■□□ 2.67
RXRBP28702 MIR6722-201ENST00000617286 78 ntBASIC31.76■■■□□ 2.67
RXRBP28702 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC31.76■■■□□ 2.67
RXRBP28702 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RXRBP28702 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RXRBP28702 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
RXRBP28702 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC31.75■■■□□ 2.67
RXRBP28702 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC31.75■■■□□ 2.67
RXRBP28702 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
RXRBP28702 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC31.74■■■□□ 2.67
RXRBP28702 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
RXRBP28702 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
RXRBP28702 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RXRBP28702 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
RXRBP28702 HACD1-201ENST00000326961 773 ntTSL 2 BASIC31.73■■■□□ 2.67
RXRBP28702 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RXRBP28702 HLA-L-209ENST00000420110 1011 ntBASIC31.73■■■□□ 2.67
RXRBP28702 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC31.73■■■□□ 2.67
RXRBP28702 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RXRBP28702 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RXRBP28702 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC31.72■■■□□ 2.67
RXRBP28702 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
RXRBP28702 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RXRBP28702 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC31.71■■■□□ 2.67
RXRBP28702 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
RXRBP28702 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RXRBP28702 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC31.7■■■□□ 2.67
RXRBP28702 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.7■■■□□ 2.67
RXRBP28702 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RXRBP28702 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC31.7■■■□□ 2.67
RXRBP28702 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
RXRBP28702 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
RXRBP28702 SYT6-210ENST00000641643 1587 ntBASIC31.69■■■□□ 2.66
RXRBP28702 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RXRBP28702 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RXRBP28702 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC31.69■■■□□ 2.66
RXRBP28702 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RXRBP28702 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RXRBP28702 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC31.68■■■□□ 2.66
RXRBP28702 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC31.68■■■□□ 2.66
RXRBP28702 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
RXRBP28702 AC008764.7-201ENST00000593779 1081 ntBASIC31.67■■■□□ 2.66
RXRBP28702 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.66■■■□□ 2.66
RXRBP28702 AK1-201ENST00000223836 736 ntTSL 3 BASIC31.66■■■□□ 2.66
RXRBP28702 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.66■■■□□ 2.66
RXRBP28702 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
RXRBP28702 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
RXRBP28702 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
RXRBP28702 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RXRBP28702 ABHD17AP1-201ENST00000358206 933 ntBASIC31.65■■■□□ 2.66
RXRBP28702 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC31.65■■■□□ 2.66
RXRBP28702 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.65■■■□□ 2.66
RXRBP28702 SNX5-217ENST00000606557 1087 ntBASIC31.65■■■□□ 2.66
RXRBP28702 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC31.65■■■□□ 2.66
RXRBP28702 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
RXRBP28702 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RXRBP28702 ABCB10P3-201ENST00000561950 2166 ntBASIC31.64■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms