Protein–RNA interactions for Protein: Q5S007

LRRK2, Leucine-rich repeat serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 2,527 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK2Q5S007 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.11■□□□□ 0.97
LRRK2Q5S007 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.11■□□□□ 0.97
LRRK2Q5S007 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRK2Q5S007 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRK2Q5S007 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRK2Q5S007 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
LRRK2Q5S007 ID1-201ENST00000376105 1233 ntBASIC21.1■□□□□ 0.97
LRRK2Q5S007 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LRRK2Q5S007 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LRRK2Q5S007 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.1■□□□□ 0.97
LRRK2Q5S007 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.1■□□□□ 0.97
LRRK2Q5S007 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRK2Q5S007 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRK2Q5S007 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.09■□□□□ 0.97
LRRK2Q5S007 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.09■□□□□ 0.97
LRRK2Q5S007 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRK2Q5S007 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRRK2Q5S007 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.09■□□□□ 0.97
LRRK2Q5S007 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRK2Q5S007 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRRK2Q5S007 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRK2Q5S007 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
LRRK2Q5S007 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
LRRK2Q5S007 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LRRK2Q5S007 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LRRK2Q5S007 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.07■□□□□ 0.96
LRRK2Q5S007 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK2Q5S007 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK2Q5S007 AC034268.1-201ENST00000441047 882 ntBASIC21.07■□□□□ 0.96
LRRK2Q5S007 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK2Q5S007 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK2Q5S007 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK2Q5S007 AP002414.2-202ENST00000590929 1450 ntBASIC21.07■□□□□ 0.96
LRRK2Q5S007 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
LRRK2Q5S007 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK2Q5S007 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.07■□□□□ 0.96
LRRK2Q5S007 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
LRRK2Q5S007 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
LRRK2Q5S007 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
LRRK2Q5S007 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK2Q5S007 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK2Q5S007 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK2Q5S007 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.06■□□□□ 0.96
LRRK2Q5S007 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRK2Q5S007 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRK2Q5S007 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 AL139393.2-201ENST00000608721 2025 ntBASIC21.05■□□□□ 0.96
LRRK2Q5S007 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRK2Q5S007 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.04■□□□□ 0.96
LRRK2Q5S007 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK2Q5S007 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK2Q5S007 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.04■□□□□ 0.96
LRRK2Q5S007 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK2Q5S007 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK2Q5S007 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK2Q5S007 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRK2Q5S007 AC022517.1-201ENST00000592429 346 ntBASIC21.03■□□□□ 0.96
LRRK2Q5S007 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.02■□□□□ 0.96
LRRK2Q5S007 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
LRRK2Q5S007 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
LRRK2Q5S007 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.02■□□□□ 0.95
LRRK2Q5S007 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.01■□□□□ 0.95
LRRK2Q5S007 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.01■□□□□ 0.95
LRRK2Q5S007 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.01■□□□□ 0.95
LRRK2Q5S007 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LRRK2Q5S007 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRRK2Q5S007 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21■□□□□ 0.95
LRRK2Q5S007 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21■□□□□ 0.95
LRRK2Q5S007 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRRK2Q5S007 SF1-220ENST00000626028 704 ntTSL 2 BASIC21■□□□□ 0.95
LRRK2Q5S007 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRRK2Q5S007 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21■□□□□ 0.95
LRRK2Q5S007 IKBKGP1-201ENST00000612193 1073 ntBASIC21■□□□□ 0.95
LRRK2Q5S007 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LRRK2Q5S007 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.99■□□□□ 0.95
LRRK2Q5S007 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRRK2Q5S007 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.99■□□□□ 0.95
LRRK2Q5S007 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK2Q5S007 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK2Q5S007 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK2Q5S007 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.98■□□□□ 0.95
LRRK2Q5S007 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.98■□□□□ 0.95
LRRK2Q5S007 AC092437.1-201ENST00000624794 1048 ntBASIC20.98■□□□□ 0.95
LRRK2Q5S007 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK2Q5S007 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.98■□□□□ 0.95
LRRK2Q5S007 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LRRK2Q5S007 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LRRK2Q5S007 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms