Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
COL5A3P25940 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL5A3P25940 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.62■■■□□ 2.49
COL5A3P25940 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.62■■■□□ 2.49
COL5A3P25940 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL5A3P25940 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.61■■■□□ 2.49
COL5A3P25940 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.61■■■□□ 2.49
COL5A3P25940 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL5A3P25940 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.61■■■□□ 2.49
COL5A3P25940 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.61■■■□□ 2.49
COL5A3P25940 AC010997.5-201ENST00000609182 354 ntBASIC30.61■■■□□ 2.49
COL5A3P25940 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
COL5A3P25940 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL5A3P25940 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.59■■■□□ 2.49
COL5A3P25940 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.59■■■□□ 2.49
COL5A3P25940 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC30.59■■■□□ 2.49
COL5A3P25940 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.59■■■□□ 2.49
COL5A3P25940 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
COL5A3P25940 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL5A3P25940 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL5A3P25940 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.58■■■□□ 2.49
COL5A3P25940 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.58■■■□□ 2.49
COL5A3P25940 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL5A3P25940 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
COL5A3P25940 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL5A3P25940 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.57■■■□□ 2.48
COL5A3P25940 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.56■■■□□ 2.48
COL5A3P25940 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL5A3P25940 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL5A3P25940 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL5A3P25940 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.56■■■□□ 2.48
COL5A3P25940 RASSF1-AS1-201ENST00000629828 790 ntBASIC30.56■■■□□ 2.48
COL5A3P25940 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL5A3P25940 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
COL5A3P25940 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
COL5A3P25940 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL5A3P25940 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL5A3P25940 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
COL5A3P25940 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.54■■■□□ 2.48
COL5A3P25940 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL5A3P25940 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL5A3P25940 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.53■■■□□ 2.48
COL5A3P25940 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC30.53■■■□□ 2.48
COL5A3P25940 AF131216.4-201ENST00000638924 1588 ntBASIC30.53■■■□□ 2.48
COL5A3P25940 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.53■■■□□ 2.48
COL5A3P25940 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL5A3P25940 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
COL5A3P25940 GAK-223ENST00000628912 497 ntTSL 5 BASIC30.52■■■□□ 2.48
COL5A3P25940 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC30.52■■■□□ 2.48
COL5A3P25940 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
COL5A3P25940 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL5A3P25940 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.52■■■□□ 2.48
COL5A3P25940 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
COL5A3P25940 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.48
COL5A3P25940 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
COL5A3P25940 AC096631.2-201ENST00000436136 790 ntBASIC30.51■■■□□ 2.47
COL5A3P25940 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL5A3P25940 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL5A3P25940 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL5A3P25940 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.5■■■□□ 2.47
COL5A3P25940 AP004609.3-201ENST00000610705 1884 ntBASIC30.49■■■□□ 2.47
COL5A3P25940 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL5A3P25940 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.49■■■□□ 2.47
COL5A3P25940 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL5A3P25940 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
COL5A3P25940 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL5A3P25940 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL5A3P25940 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
COL5A3P25940 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.47■■■□□ 2.47
COL5A3P25940 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC30.47■■■□□ 2.47
COL5A3P25940 SNAI3-AS1-204ENST00000567997 2048 ntBASIC30.46■■■□□ 2.47
COL5A3P25940 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.46■■■□□ 2.47
COL5A3P25940 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL5A3P25940 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.46■■■□□ 2.47
COL5A3P25940 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.45■■■□□ 2.47
COL5A3P25940 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC30.45■■■□□ 2.47
COL5A3P25940 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC30.45■■■□□ 2.46
COL5A3P25940 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL5A3P25940 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL5A3P25940 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL5A3P25940 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
COL5A3P25940 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL5A3P25940 SNX5-217ENST00000606557 1087 ntBASIC30.44■■■□□ 2.46
COL5A3P25940 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL5A3P25940 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL5A3P25940 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
COL5A3P25940 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL5A3P25940 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
COL5A3P25940 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.42■■■□□ 2.46
COL5A3P25940 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL5A3P25940 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
COL5A3P25940 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL5A3P25940 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
COL5A3P25940 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL5A3P25940 AK3-203ENST00000447596 705 ntTSL 2 BASIC30.41■■■□□ 2.46
COL5A3P25940 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.41■■■□□ 2.46
COL5A3P25940 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL5A3P25940 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL5A3P25940 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL5A3P25940 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC30.4■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms