Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LINC01006Q8NI28 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.82■□□□□ 0.6
LINC01006Q8NI28 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.82■□□□□ 0.6
LINC01006Q8NI28 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LINC01006Q8NI28 AC021242.3-201ENST00000607598 1377 ntBASIC18.81■□□□□ 0.6
LINC01006Q8NI28 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LINC01006Q8NI28 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LINC01006Q8NI28 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LINC01006Q8NI28 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LINC01006Q8NI28 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LINC01006Q8NI28 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 TSPY9P-201ENST00000440215 945 ntBASIC18.8■□□□□ 0.6
LINC01006Q8NI28 TSPY11P-201ENST00000442607 1045 ntBASIC18.8■□□□□ 0.6
LINC01006Q8NI28 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.8■□□□□ 0.6
LINC01006Q8NI28 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC01006Q8NI28 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LINC01006Q8NI28 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LINC01006Q8NI28 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LINC01006Q8NI28 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LINC01006Q8NI28 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.76■□□□□ 0.59
LINC01006Q8NI28 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.76■□□□□ 0.59
LINC01006Q8NI28 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC18.76■□□□□ 0.59
LINC01006Q8NI28 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LINC01006Q8NI28 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LINC01006Q8NI28 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.75■□□□□ 0.59
LINC01006Q8NI28 AC092028.1-203ENST00000608262 953 ntBASIC18.75■□□□□ 0.59
LINC01006Q8NI28 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LINC01006Q8NI28 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LINC01006Q8NI28 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LINC01006Q8NI28 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
LINC01006Q8NI28 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.74■□□□□ 0.59
LINC01006Q8NI28 MIR4281-201ENST00000580852 62 ntBASIC18.74■□□□□ 0.59
LINC01006Q8NI28 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LINC01006Q8NI28 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.73■□□□□ 0.59
LINC01006Q8NI28 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LINC01006Q8NI28 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LINC01006Q8NI28 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LINC01006Q8NI28 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LINC01006Q8NI28 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LINC01006Q8NI28 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.71■□□□□ 0.58
LINC01006Q8NI28 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.7■□□□□ 0.58
LINC01006Q8NI28 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.69■□□□□ 0.58
LINC01006Q8NI28 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LINC01006Q8NI28 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC18.69■□□□□ 0.58
LINC01006Q8NI28 SHF-208ENST00000560734 1731 ntTSL 3 BASIC18.69■□□□□ 0.58
LINC01006Q8NI28 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LINC01006Q8NI28 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms