Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ALMS1Q8TCU4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 KRT18P24-201ENST00000344739 1156 ntBASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 AC104564.3-201ENST00000582367 638 ntBASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
ALMS1Q8TCU4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 MIR6724-1-201ENST00000616420 92 ntBASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 MIR6724-2-201ENST00000616483 92 ntBASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 MIR6724-4-201ENST00000617390 92 ntBASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 MIR6724-3-201ENST00000622482 92 ntBASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC16.59■□□□□ 0.25
ALMS1Q8TCU4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC16.58■□□□□ 0.25
ALMS1Q8TCU4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.58■□□□□ 0.25
ALMS1Q8TCU4 MTDHP2-201ENST00000601468 714 ntBASIC16.58■□□□□ 0.25
ALMS1Q8TCU4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC16.58■□□□□ 0.25
ALMS1Q8TCU4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ALMS1Q8TCU4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ALMS1Q8TCU4 ABCB10P3-201ENST00000561950 2166 ntBASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 AC010997.5-201ENST00000609182 354 ntBASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 MIR5787-201ENST00000611784 55 ntBASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 RASSF1-AS1-201ENST00000629828 790 ntBASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ALMS1Q8TCU4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ALMS1Q8TCU4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
ALMS1Q8TCU4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.55■□□□□ 0.24
ALMS1Q8TCU4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC16.55■□□□□ 0.24
ALMS1Q8TCU4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC16.55■□□□□ 0.24
ALMS1Q8TCU4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ALMS1Q8TCU4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ALMS1Q8TCU4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.54■□□□□ 0.24
ALMS1Q8TCU4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
ALMS1Q8TCU4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ALMS1Q8TCU4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.54■□□□□ 0.24
ALMS1Q8TCU4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.54■□□□□ 0.24
ALMS1Q8TCU4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 SUDS3P1-201ENST00000505831 966 ntBASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ALMS1Q8TCU4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.52■□□□□ 0.24
ALMS1Q8TCU4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ALMS1Q8TCU4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
ALMS1Q8TCU4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ALMS1Q8TCU4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 AL162430.1-201ENST00000480705 870 ntBASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.51■□□□□ 0.23
ALMS1Q8TCU4 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms