Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
NPHP4O75161 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC34.78■■■■□ 3.16
NPHP4O75161 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
NPHP4O75161 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
NPHP4O75161 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC34.77■■■■□ 3.16
NPHP4O75161 AC010997.5-201ENST00000609182 354 ntBASIC34.77■■■■□ 3.16
NPHP4O75161 ABCB10P3-201ENST00000561950 2166 ntBASIC34.77■■■■□ 3.16
NPHP4O75161 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC34.77■■■■□ 3.16
NPHP4O75161 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
NPHP4O75161 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC34.76■■■■□ 3.16
NPHP4O75161 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC34.76■■■■□ 3.16
NPHP4O75161 AL512631.2-201ENST00000604634 923 ntBASIC34.76■■■■□ 3.16
NPHP4O75161 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC34.76■■■■□ 3.15
NPHP4O75161 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC34.76■■■■□ 3.15
NPHP4O75161 AC104564.3-201ENST00000582367 638 ntBASIC34.75■■■■□ 3.15
NPHP4O75161 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
NPHP4O75161 QDPR-206ENST00000508623 601 ntTSL 3 BASIC34.74■■■■□ 3.15
NPHP4O75161 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC34.74■■■■□ 3.15
NPHP4O75161 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC34.74■■■■□ 3.15
NPHP4O75161 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
NPHP4O75161 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
NPHP4O75161 KRT18P10-201ENST00000388836 1287 ntBASIC34.73■■■■□ 3.15
NPHP4O75161 MIR4281-201ENST00000580852 62 ntBASIC34.73■■■■□ 3.15
NPHP4O75161 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC34.73■■■■□ 3.15
NPHP4O75161 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
NPHP4O75161 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
NPHP4O75161 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
NPHP4O75161 LSM4-201ENST00000252816 986 ntTSL 2 BASIC34.72■■■■□ 3.15
NPHP4O75161 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC34.72■■■■□ 3.15
NPHP4O75161 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC34.71■■■■□ 3.15
NPHP4O75161 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC34.71■■■■□ 3.15
NPHP4O75161 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
NPHP4O75161 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC34.71■■■■□ 3.15
NPHP4O75161 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC34.71■■■■□ 3.15
NPHP4O75161 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC34.7■■■■□ 3.15
NPHP4O75161 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC34.7■■■■□ 3.15
NPHP4O75161 AL356740.2-201ENST00000601559 647 ntBASIC34.7■■■■□ 3.15
NPHP4O75161 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
NPHP4O75161 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.14
NPHP4O75161 MTDHP2-201ENST00000601468 714 ntBASIC34.69■■■■□ 3.14
NPHP4O75161 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
NPHP4O75161 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
NPHP4O75161 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC34.68■■■■□ 3.14
NPHP4O75161 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC34.67■■■■□ 3.14
NPHP4O75161 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC34.67■■■■□ 3.14
NPHP4O75161 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
NPHP4O75161 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC34.66■■■■□ 3.14
NPHP4O75161 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
NPHP4O75161 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC34.66■■■■□ 3.14
NPHP4O75161 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
NPHP4O75161 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
NPHP4O75161 AC135279.3-201ENST00000610945 1311 ntBASIC34.65■■■■□ 3.14
NPHP4O75161 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC34.64■■■■□ 3.14
NPHP4O75161 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC34.63■■■■□ 3.14
NPHP4O75161 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC34.63■■■■□ 3.13
NPHP4O75161 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
NPHP4O75161 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC34.63■■■■□ 3.13
NPHP4O75161 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC34.63■■■■□ 3.13
NPHP4O75161 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
NPHP4O75161 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC34.62■■■■□ 3.13
NPHP4O75161 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
NPHP4O75161 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC34.62■■■■□ 3.13
NPHP4O75161 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
NPHP4O75161 SENP5-202ENST00000419026 973 ntTSL 3 BASIC34.62■■■■□ 3.13
NPHP4O75161 AC106739.1-201ENST00000617035 715 ntBASIC34.62■■■■□ 3.13
NPHP4O75161 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC34.61■■■■□ 3.13
NPHP4O75161 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC34.61■■■■□ 3.13
NPHP4O75161 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC34.61■■■■□ 3.13
NPHP4O75161 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
NPHP4O75161 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC34.6■■■■□ 3.13
NPHP4O75161 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC34.6■■■■□ 3.13
NPHP4O75161 MIR5787-201ENST00000611784 55 ntBASIC34.6■■■■□ 3.13
NPHP4O75161 RASSF1-AS1-201ENST00000629828 790 ntBASIC34.6■■■■□ 3.13
NPHP4O75161 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
NPHP4O75161 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
NPHP4O75161 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC34.59■■■■□ 3.13
NPHP4O75161 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC34.59■■■■□ 3.13
NPHP4O75161 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC34.59■■■■□ 3.13
NPHP4O75161 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC34.58■■■■□ 3.13
NPHP4O75161 TK2-202ENST00000417693 1046 ntTSL 2 BASIC34.58■■■■□ 3.13
NPHP4O75161 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
NPHP4O75161 EXOG-217ENST00000630638 197 ntTSL 5 BASIC34.58■■■■□ 3.13
NPHP4O75161 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC34.58■■■■□ 3.13
NPHP4O75161 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC34.58■■■■□ 3.13
NPHP4O75161 AL139393.2-201ENST00000608721 2025 ntBASIC34.57■■■■□ 3.13
NPHP4O75161 AC142381.2-201ENST00000566120 298 ntBASIC34.57■■■■□ 3.13
NPHP4O75161 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
NPHP4O75161 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
NPHP4O75161 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC34.57■■■■□ 3.12
NPHP4O75161 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
NPHP4O75161 LGR4-203ENST00000480977 492 ntTSL 2 BASIC34.56■■■■□ 3.12
NPHP4O75161 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC34.56■■■■□ 3.12
NPHP4O75161 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC34.55■■■■□ 3.12
NPHP4O75161 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC34.55■■■■□ 3.12
NPHP4O75161 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC34.55■■■■□ 3.12
NPHP4O75161 AL031432.3-201ENST00000607698 485 ntBASIC34.55■■■■□ 3.12
NPHP4O75161 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
NPHP4O75161 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
NPHP4O75161 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC34.54■■■■□ 3.12
NPHP4O75161 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC34.53■■■■□ 3.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms