Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGN4O00479 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGN4O00479 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGN4O00479 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGN4O00479 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.41■■□□□ 1.18
HMGN4O00479 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGN4O00479 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGN4O00479 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.41■■□□□ 1.18
HMGN4O00479 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGN4O00479 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGN4O00479 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGN4O00479 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
HMGN4O00479 AC022211.4-201ENST00000625094 2161 ntBASIC22.4■■□□□ 1.18
HMGN4O00479 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
HMGN4O00479 AC142381.3-201ENST00000568208 1670 ntBASIC22.39■■□□□ 1.18
HMGN4O00479 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
HMGN4O00479 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
HMGN4O00479 AC092296.2-201ENST00000589470 999 ntBASIC22.39■■□□□ 1.17
HMGN4O00479 SRP68-213ENST00000629930 165 ntTSL 5 BASIC22.39■■□□□ 1.17
HMGN4O00479 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HMGN4O00479 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HMGN4O00479 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HMGN4O00479 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGN4O00479 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGN4O00479 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGN4O00479 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HMGN4O00479 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGN4O00479 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGN4O00479 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HMGN4O00479 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGN4O00479 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGN4O00479 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.37■■□□□ 1.17
HMGN4O00479 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGN4O00479 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
HMGN4O00479 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGN4O00479 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGN4O00479 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.36■■□□□ 1.17
HMGN4O00479 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
HMGN4O00479 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
HMGN4O00479 SMPD5-203ENST00000639008 1464 ntBASIC22.36■■□□□ 1.17
HMGN4O00479 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
HMGN4O00479 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGN4O00479 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGN4O00479 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
HMGN4O00479 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGN4O00479 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC22.35■■□□□ 1.17
HMGN4O00479 MIR3960-201ENST00000583311 91 ntBASIC22.35■■□□□ 1.17
HMGN4O00479 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGN4O00479 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.35■■□□□ 1.17
HMGN4O00479 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.35■■□□□ 1.17
HMGN4O00479 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGN4O00479 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGN4O00479 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGN4O00479 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
HMGN4O00479 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
HMGN4O00479 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGN4O00479 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.34■■□□□ 1.17
HMGN4O00479 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGN4O00479 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGN4O00479 AC138932.3-201ENST00000567634 1902 ntBASIC22.33■■□□□ 1.17
HMGN4O00479 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGN4O00479 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
HMGN4O00479 AC097639.1-201ENST00000565519 1891 ntBASIC22.33■■□□□ 1.17
HMGN4O00479 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGN4O00479 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGN4O00479 AC022413.1-201ENST00000624602 984 ntBASIC22.33■■□□□ 1.17
HMGN4O00479 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGN4O00479 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGN4O00479 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGN4O00479 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGN4O00479 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGN4O00479 ECEL1P2-201ENST00000461596 1295 ntBASIC22.32■■□□□ 1.16
HMGN4O00479 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGN4O00479 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
HMGN4O00479 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGN4O00479 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGN4O00479 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
HMGN4O00479 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGN4O00479 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGN4O00479 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
HMGN4O00479 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGN4O00479 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
HMGN4O00479 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGN4O00479 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
HMGN4O00479 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGN4O00479 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGN4O00479 AC093323.1-202ENST00000635031 2045 ntBASIC22.28■■□□□ 1.16
HMGN4O00479 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGN4O00479 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
HMGN4O00479 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGN4O00479 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGN4O00479 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGN4O00479 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGN4O00479 CEP120-209ENST00000515110 606 ntTSL 3 BASIC22.27■■□□□ 1.16
HMGN4O00479 MIR4449-201ENST00000578365 66 ntBASIC22.27■■□□□ 1.16
HMGN4O00479 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGN4O00479 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
HMGN4O00479 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGN4O00479 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
HMGN4O00479 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms