Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.63■■□□□ 1.05
COL12A1Q99715 AL162430.1-201ENST00000480705 870 ntBASIC21.63■■□□□ 1.05
COL12A1Q99715 AC092028.1-203ENST00000608262 953 ntBASIC21.63■■□□□ 1.05
COL12A1Q99715 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL12A1Q99715 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL12A1Q99715 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.62■■□□□ 1.05
COL12A1Q99715 AC021242.3-201ENST00000607598 1377 ntBASIC21.62■■□□□ 1.05
COL12A1Q99715 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.62■■□□□ 1.05
COL12A1Q99715 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL12A1Q99715 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.61■■□□□ 1.05
COL12A1Q99715 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.61■■□□□ 1.05
COL12A1Q99715 AL512631.2-201ENST00000604634 923 ntBASIC21.61■■□□□ 1.05
COL12A1Q99715 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL12A1Q99715 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.61■■□□□ 1.05
COL12A1Q99715 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.61■■□□□ 1.05
COL12A1Q99715 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.61■■□□□ 1.05
COL12A1Q99715 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.61■■□□□ 1.05
COL12A1Q99715 AL031432.3-201ENST00000607698 485 ntBASIC21.6■■□□□ 1.05
COL12A1Q99715 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL12A1Q99715 RPS2P7-201ENST00000447334 885 ntBASIC21.6■■□□□ 1.05
COL12A1Q99715 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL12A1Q99715 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.59■■□□□ 1.05
COL12A1Q99715 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.59■■□□□ 1.05
COL12A1Q99715 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.59■■□□□ 1.05
COL12A1Q99715 AC142381.2-201ENST00000566120 298 ntBASIC21.59■■□□□ 1.05
COL12A1Q99715 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.58■■□□□ 1.05
COL12A1Q99715 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL12A1Q99715 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.58■■□□□ 1.04
COL12A1Q99715 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL12A1Q99715 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL12A1Q99715 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL12A1Q99715 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL12A1Q99715 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL12A1Q99715 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.57■■□□□ 1.04
COL12A1Q99715 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.57■■□□□ 1.04
COL12A1Q99715 MIR6821-201ENST00000617625 74 ntBASIC21.57■■□□□ 1.04
COL12A1Q99715 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.56■■□□□ 1.04
COL12A1Q99715 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL12A1Q99715 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL12A1Q99715 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL12A1Q99715 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.56■■□□□ 1.04
COL12A1Q99715 AC097381.1-201ENST00000429019 1296 ntBASIC21.56■■□□□ 1.04
COL12A1Q99715 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.56■■□□□ 1.04
COL12A1Q99715 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.56■■□□□ 1.04
COL12A1Q99715 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
COL12A1Q99715 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL12A1Q99715 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.56■■□□□ 1.04
COL12A1Q99715 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.54■■□□□ 1.04
COL12A1Q99715 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL12A1Q99715 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL12A1Q99715 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
COL12A1Q99715 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
COL12A1Q99715 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.54■■□□□ 1.04
COL12A1Q99715 AC137630.3-201ENST00000607245 391 ntBASIC21.54■■□□□ 1.04
COL12A1Q99715 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.53■■□□□ 1.04
COL12A1Q99715 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.53■■□□□ 1.04
COL12A1Q99715 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL12A1Q99715 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL12A1Q99715 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL12A1Q99715 ESRRAP2-201ENST00000418437 1549 ntBASIC21.53■■□□□ 1.04
COL12A1Q99715 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL12A1Q99715 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL12A1Q99715 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL12A1Q99715 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.52■■□□□ 1.04
COL12A1Q99715 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.52■■□□□ 1.04
COL12A1Q99715 AL359504.2-201ENST00000605506 1601 ntBASIC21.52■■□□□ 1.04
COL12A1Q99715 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL12A1Q99715 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL12A1Q99715 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL12A1Q99715 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL12A1Q99715 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
COL12A1Q99715 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL12A1Q99715 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.5■■□□□ 1.03
COL12A1Q99715 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL12A1Q99715 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COL12A1Q99715 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL12A1Q99715 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.5■■□□□ 1.03
COL12A1Q99715 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
COL12A1Q99715 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL12A1Q99715 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL12A1Q99715 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.49■■□□□ 1.03
COL12A1Q99715 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.49■■□□□ 1.03
COL12A1Q99715 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL12A1Q99715 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL12A1Q99715 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.49■■□□□ 1.03
COL12A1Q99715 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
COL12A1Q99715 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL12A1Q99715 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.48■■□□□ 1.03
COL12A1Q99715 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.48■■□□□ 1.03
COL12A1Q99715 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.48■■□□□ 1.03
COL12A1Q99715 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL12A1Q99715 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.48■■□□□ 1.03
COL12A1Q99715 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL12A1Q99715 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL12A1Q99715 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.47■■□□□ 1.03
COL12A1Q99715 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.47■■□□□ 1.03
COL12A1Q99715 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
COL12A1Q99715 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.47■■□□□ 1.03
COL12A1Q99715 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.47■■□□□ 1.03
COL12A1Q99715 AL355001.2-201ENST00000620617 1191 ntBASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms