Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HSPG2P98160 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
HSPG2P98160 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HSPG2P98160 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HSPG2P98160 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
HSPG2P98160 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HSPG2P98160 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HSPG2P98160 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC15.44■□□□□ 0.06
HSPG2P98160 MIR6821-201ENST00000617625 74 ntBASIC15.44■□□□□ 0.06
HSPG2P98160 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HSPG2P98160 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HSPG2P98160 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HSPG2P98160 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
HSPG2P98160 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
HSPG2P98160 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
HSPG2P98160 PLD4-205ENST00000553861 667 ntTSL 2 BASIC15.43■□□□□ 0.06
HSPG2P98160 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HSPG2P98160 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
HSPG2P98160 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
HSPG2P98160 ANKRD20A6P-201ENST00000618763 204 ntBASIC15.42■□□□□ 0.06
HSPG2P98160 QDPR-206ENST00000508623 601 ntTSL 3 BASIC15.42■□□□□ 0.06
HSPG2P98160 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HSPG2P98160 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC15.42■□□□□ 0.06
HSPG2P98160 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HSPG2P98160 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC15.41■□□□□ 0.06
HSPG2P98160 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 LSM4-201ENST00000252816 986 ntTSL 2 BASIC15.4■□□□□ 0.06
HSPG2P98160 AC090192.1-201ENST00000517740 490 ntBASIC15.4■□□□□ 0.06
HSPG2P98160 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
HSPG2P98160 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC15.4■□□□□ 0.06
HSPG2P98160 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HSPG2P98160 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HSPG2P98160 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
HSPG2P98160 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HSPG2P98160 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC15.39■□□□□ 0.05
HSPG2P98160 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HSPG2P98160 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HSPG2P98160 LGR4-203ENST00000480977 492 ntTSL 2 BASIC15.39■□□□□ 0.05
HSPG2P98160 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC15.39■□□□□ 0.05
HSPG2P98160 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HSPG2P98160 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC15.38■□□□□ 0.05
HSPG2P98160 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
HSPG2P98160 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC15.38■□□□□ 0.05
HSPG2P98160 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HSPG2P98160 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.38■□□□□ 0.05
HSPG2P98160 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HSPG2P98160 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC15.38■□□□□ 0.05
HSPG2P98160 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HSPG2P98160 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HSPG2P98160 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC15.37■□□□□ 0.05
HSPG2P98160 AL359504.2-201ENST00000605506 1601 ntBASIC15.37■□□□□ 0.05
HSPG2P98160 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC15.37■□□□□ 0.05
HSPG2P98160 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC15.37■□□□□ 0.05
HSPG2P98160 RASSF1-AS1-201ENST00000629828 790 ntBASIC15.37■□□□□ 0.05
HSPG2P98160 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HSPG2P98160 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC15.36■□□□□ 0.05
HSPG2P98160 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
HSPG2P98160 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HSPG2P98160 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC15.36■□□□□ 0.05
HSPG2P98160 AC142381.2-201ENST00000566120 298 ntBASIC15.36■□□□□ 0.05
HSPG2P98160 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC15.35■□□□□ 0.05
HSPG2P98160 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HSPG2P98160 AC087623.3-201ENST00000607047 1098 ntBASIC15.35■□□□□ 0.05
HSPG2P98160 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC15.35■□□□□ 0.05
HSPG2P98160 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HSPG2P98160 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HSPG2P98160 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HSPG2P98160 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
HSPG2P98160 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HSPG2P98160 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HSPG2P98160 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC15.34■□□□□ 0.05
HSPG2P98160 AC106739.1-201ENST00000617035 715 ntBASIC15.34■□□□□ 0.05
HSPG2P98160 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HSPG2P98160 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC15.34■□□□□ 0.05
HSPG2P98160 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC15.34■□□□□ 0.05
HSPG2P98160 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC15.34■□□□□ 0.05
HSPG2P98160 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC15.34■□□□□ 0.05
HSPG2P98160 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
HSPG2P98160 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HSPG2P98160 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HSPG2P98160 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC15.33■□□□□ 0.04
HSPG2P98160 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC15.33■□□□□ 0.04
HSPG2P98160 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HSPG2P98160 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
HSPG2P98160 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC15.33■□□□□ 0.04
HSPG2P98160 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC15.33■□□□□ 0.04
HSPG2P98160 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HSPG2P98160 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC15.32■□□□□ 0.04
HSPG2P98160 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HSPG2P98160 AC120024.1-201ENST00000562672 995 ntBASIC15.32■□□□□ 0.04
HSPG2P98160 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC15.32■□□□□ 0.04
HSPG2P98160 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HSPG2P98160 KRT18P24-201ENST00000344739 1156 ntBASIC15.32■□□□□ 0.04
HSPG2P98160 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms