Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
ABCA4P78363 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.98■□□□□ 0.95
ABCA4P78363 AC022616.5-201ENST00000518796 181 ntBASIC20.98■□□□□ 0.95
ABCA4P78363 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA4P78363 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA4P78363 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.98■□□□□ 0.95
ABCA4P78363 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA4P78363 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.98■□□□□ 0.95
ABCA4P78363 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.98■□□□□ 0.95
ABCA4P78363 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA4P78363 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ABCA4P78363 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.97■□□□□ 0.95
ABCA4P78363 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.97■□□□□ 0.95
ABCA4P78363 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ABCA4P78363 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.97■□□□□ 0.95
ABCA4P78363 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.97■□□□□ 0.95
ABCA4P78363 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ABCA4P78363 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ABCA4P78363 AL449106.1-201ENST00000608517 1980 ntBASIC20.96■□□□□ 0.95
ABCA4P78363 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
ABCA4P78363 RPS2P7-201ENST00000447334 885 ntBASIC20.96■□□□□ 0.95
ABCA4P78363 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA4P78363 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA4P78363 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.95■□□□□ 0.95
ABCA4P78363 AC008406.3-201ENST00000620001 1374 ntBASIC20.95■□□□□ 0.94
ABCA4P78363 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
ABCA4P78363 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ABCA4P78363 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
ABCA4P78363 DRD5P2-201ENST00000421395 2012 ntBASIC20.95■□□□□ 0.94
ABCA4P78363 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
ABCA4P78363 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA4P78363 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA4P78363 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA4P78363 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.94■□□□□ 0.94
ABCA4P78363 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA4P78363 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.94■□□□□ 0.94
ABCA4P78363 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.94■□□□□ 0.94
ABCA4P78363 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.94■□□□□ 0.94
ABCA4P78363 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA4P78363 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.94■□□□□ 0.94
ABCA4P78363 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA4P78363 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ABCA4P78363 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ABCA4P78363 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.93■□□□□ 0.94
ABCA4P78363 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ABCA4P78363 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.93■□□□□ 0.94
ABCA4P78363 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
ABCA4P78363 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.93■□□□□ 0.94
ABCA4P78363 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.93■□□□□ 0.94
ABCA4P78363 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ABCA4P78363 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
ABCA4P78363 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ABCA4P78363 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
ABCA4P78363 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ABCA4P78363 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ABCA4P78363 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.92■□□□□ 0.94
ABCA4P78363 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ABCA4P78363 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ABCA4P78363 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
ABCA4P78363 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA4P78363 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA4P78363 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA4P78363 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA4P78363 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA4P78363 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
ABCA4P78363 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.9■□□□□ 0.94
ABCA4P78363 KRT125P-201ENST00000546827 989 ntBASIC20.9■□□□□ 0.94
ABCA4P78363 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
ABCA4P78363 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.9■□□□□ 0.94
ABCA4P78363 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
ABCA4P78363 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ABCA4P78363 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ABCA4P78363 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ABCA4P78363 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ABCA4P78363 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ABCA4P78363 BX255925.1-201ENST00000566954 1854 ntBASIC20.88■□□□□ 0.93
ABCA4P78363 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA4P78363 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.88■□□□□ 0.93
ABCA4P78363 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ABCA4P78363 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA4P78363 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA4P78363 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA4P78363 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.88■□□□□ 0.93
ABCA4P78363 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ABCA4P78363 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCA4P78363 MIR4787-201ENST00000607364 84 ntBASIC20.87■□□□□ 0.93
ABCA4P78363 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
ABCA4P78363 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
ABCA4P78363 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ABCA4P78363 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ABCA4P78363 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
ABCA4P78363 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
ABCA4P78363 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ABCA4P78363 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCA4P78363 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ABCA4P78363 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.85■□□□□ 0.93
ABCA4P78363 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.85■□□□□ 0.93
ABCA4P78363 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ABCA4P78363 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.85■□□□□ 0.93
ABCA4P78363 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms