Protein–RNA interactions for Protein: Q8WWV3

RTN4IP1, Reticulon-4-interacting protein 1, mitochondrial, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1Q8WWV3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN4IP1Q8WWV3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTN4IP1Q8WWV3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.35■□□□□ 0.85
RTN4IP1Q8WWV3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN4IP1Q8WWV3 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.35■□□□□ 0.85
RTN4IP1Q8WWV3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RTN4IP1Q8WWV3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
RTN4IP1Q8WWV3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN4IP1Q8WWV3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.34■□□□□ 0.85
RTN4IP1Q8WWV3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
RTN4IP1Q8WWV3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4IP1Q8WWV3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4IP1Q8WWV3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4IP1Q8WWV3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4IP1Q8WWV3 CR559946.2-201ENST00000623684 991 ntBASIC20.33■□□□□ 0.85
RTN4IP1Q8WWV3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.33■□□□□ 0.84
RTN4IP1Q8WWV3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4IP1Q8WWV3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 MIR7108-201ENST00000614319 87 ntBASIC20.32■□□□□ 0.84
RTN4IP1Q8WWV3 AC008813.1-201ENST00000536597 885 ntBASIC20.31■□□□□ 0.84
RTN4IP1Q8WWV3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RTN4IP1Q8WWV3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RTN4IP1Q8WWV3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RTN4IP1Q8WWV3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
RTN4IP1Q8WWV3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 MIR3648-2-201ENST00000581792 180 ntBASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 MIR3648-1-201ENST00000615959 180 ntBASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RTN4IP1Q8WWV3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
RTN4IP1Q8WWV3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RTN4IP1Q8WWV3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN4IP1Q8WWV3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN4IP1Q8WWV3 ERN1-208ENST00000606895 2068 ntBASIC20.28■□□□□ 0.84
RTN4IP1Q8WWV3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN4IP1Q8WWV3 WHAMMP3-201ENST00000611636 1609 ntBASIC20.28■□□□□ 0.84
RTN4IP1Q8WWV3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RTN4IP1Q8WWV3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.27■□□□□ 0.84
RTN4IP1Q8WWV3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RTN4IP1Q8WWV3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RTN4IP1Q8WWV3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
RTN4IP1Q8WWV3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTN4IP1Q8WWV3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTN4IP1Q8WWV3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RTN4IP1Q8WWV3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTN4IP1Q8WWV3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTN4IP1Q8WWV3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RTN4IP1Q8WWV3 AC016575.1-201ENST00000607026 382 ntBASIC20.25■□□□□ 0.83
RTN4IP1Q8WWV3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTN4IP1Q8WWV3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RTN4IP1Q8WWV3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTN4IP1Q8WWV3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RTN4IP1Q8WWV3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
RTN4IP1Q8WWV3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 AC010501.1-201ENST00000606270 1962 ntBASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RTN4IP1Q8WWV3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 AC148477.6-201ENST00000623746 465 ntBASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN4IP1Q8WWV3 HLA-V-202ENST00000446817 847 ntBASIC20.21■□□□□ 0.83
RTN4IP1Q8WWV3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.21■□□□□ 0.83
RTN4IP1Q8WWV3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms