Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC27.08■■□□□ 1.93
CCDC65Q8IXS2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC65Q8IXS2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC65Q8IXS2 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC27.07■■□□□ 1.92
CCDC65Q8IXS2 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
CCDC65Q8IXS2 AC092296.2-201ENST00000589470 999 ntBASIC27.07■■□□□ 1.92
CCDC65Q8IXS2 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC65Q8IXS2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC65Q8IXS2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.06■■□□□ 1.92
CCDC65Q8IXS2 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
CCDC65Q8IXS2 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC65Q8IXS2 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC65Q8IXS2 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 AC145676.1-201ENST00000514988 2004 ntBASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC65Q8IXS2 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
CCDC65Q8IXS2 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
CCDC65Q8IXS2 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC65Q8IXS2 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC65Q8IXS2 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC27.03■■□□□ 1.92
CCDC65Q8IXS2 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
CCDC65Q8IXS2 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.01■■□□□ 1.92
CCDC65Q8IXS2 ECEL1P2-201ENST00000461596 1295 ntBASIC27.01■■□□□ 1.91
CCDC65Q8IXS2 AC025884.2-201ENST00000553429 711 ntBASIC27.01■■□□□ 1.91
CCDC65Q8IXS2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC65Q8IXS2 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC65Q8IXS2 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27■■□□□ 1.91
CCDC65Q8IXS2 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27■■□□□ 1.91
CCDC65Q8IXS2 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27■■□□□ 1.91
CCDC65Q8IXS2 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27■■□□□ 1.91
CCDC65Q8IXS2 GPX1-201ENST00000419349 1106 ntBASIC27■■□□□ 1.91
CCDC65Q8IXS2 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27■■□□□ 1.91
CCDC65Q8IXS2 SMPD5-203ENST00000639008 1464 ntBASIC27■■□□□ 1.91
CCDC65Q8IXS2 DUSP8P4-201ENST00000399538 1761 ntBASIC26.99■■□□□ 1.91
CCDC65Q8IXS2 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.99■■□□□ 1.91
CCDC65Q8IXS2 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
CCDC65Q8IXS2 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.99■■□□□ 1.91
CCDC65Q8IXS2 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC65Q8IXS2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC65Q8IXS2 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.98■■□□□ 1.91
CCDC65Q8IXS2 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC65Q8IXS2 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.98■■□□□ 1.91
CCDC65Q8IXS2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC65Q8IXS2 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.96■■□□□ 1.91
CCDC65Q8IXS2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC65Q8IXS2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC65Q8IXS2 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.96■■□□□ 1.91
CCDC65Q8IXS2 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC65Q8IXS2 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
CCDC65Q8IXS2 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC65Q8IXS2 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC65Q8IXS2 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC65Q8IXS2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC65Q8IXS2 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC65Q8IXS2 MIR3960-201ENST00000583311 91 ntBASIC26.94■■□□□ 1.9
CCDC65Q8IXS2 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC65Q8IXS2 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.94■■□□□ 1.9
CCDC65Q8IXS2 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC65Q8IXS2 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC65Q8IXS2 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.93■■□□□ 1.9
CCDC65Q8IXS2 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.93■■□□□ 1.9
CCDC65Q8IXS2 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.93■■□□□ 1.9
CCDC65Q8IXS2 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC65Q8IXS2 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC65Q8IXS2 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.91■■□□□ 1.9
CCDC65Q8IXS2 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.91■■□□□ 1.9
CCDC65Q8IXS2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.91■■□□□ 1.9
CCDC65Q8IXS2 ERN1-208ENST00000606895 2068 ntBASIC26.91■■□□□ 1.9
CCDC65Q8IXS2 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.9■■□□□ 1.9
CCDC65Q8IXS2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC65Q8IXS2 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC65Q8IXS2 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.9■■□□□ 1.9
CCDC65Q8IXS2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC65Q8IXS2 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.89■■□□□ 1.9
CCDC65Q8IXS2 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CCDC65Q8IXS2 AC010501.1-201ENST00000606270 1962 ntBASIC26.89■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms