Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CSPG4Q6UVK1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.29■□□□□ 0.84
CSPG4Q6UVK1 AC087393.1-201ENST00000582896 145 ntBASIC20.29■□□□□ 0.84
CSPG4Q6UVK1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CSPG4Q6UVK1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CSPG4Q6UVK1 MIR4787-201ENST00000607364 84 ntBASIC20.28■□□□□ 0.84
CSPG4Q6UVK1 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSPG4Q6UVK1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CSPG4Q6UVK1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSPG4Q6UVK1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.28■□□□□ 0.84
CSPG4Q6UVK1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
CSPG4Q6UVK1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.27■□□□□ 0.84
CSPG4Q6UVK1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSPG4Q6UVK1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSPG4Q6UVK1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CSPG4Q6UVK1 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSPG4Q6UVK1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CSPG4Q6UVK1 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSPG4Q6UVK1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSPG4Q6UVK1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSPG4Q6UVK1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.25■□□□□ 0.83
CSPG4Q6UVK1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSPG4Q6UVK1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 AC139426.1-201ENST00000568218 2529 ntBASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.24■□□□□ 0.83
CSPG4Q6UVK1 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSPG4Q6UVK1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSPG4Q6UVK1 AC131281.2-201ENST00000520478 145 ntBASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSPG4Q6UVK1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 UNC93B8-201ENST00000511903 705 ntBASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 AP002414.2-202ENST00000590929 1450 ntBASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 AC092666.2-201ENST00000613287 246 ntBASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSPG4Q6UVK1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 BX664725.1-201ENST00000438252 379 ntBASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 AC022616.5-201ENST00000518796 181 ntBASIC20.19■□□□□ 0.82
CSPG4Q6UVK1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSPG4Q6UVK1 RPS2P7-201ENST00000447334 885 ntBASIC20.18■□□□□ 0.82
CSPG4Q6UVK1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.18■□□□□ 0.82
CSPG4Q6UVK1 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSPG4Q6UVK1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSPG4Q6UVK1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSPG4Q6UVK1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSPG4Q6UVK1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.17■□□□□ 0.82
CSPG4Q6UVK1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSPG4Q6UVK1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSPG4Q6UVK1 AC110285.6-201ENST00000617652 491 ntBASIC20.16■□□□□ 0.82
CSPG4Q6UVK1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSPG4Q6UVK1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms