Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAV1-1A0A0B4J248 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TRAV1-1A0A0B4J248 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-1A0A0B4J248 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-1A0A0B4J248 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-1A0A0B4J248 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 AC097639.1-201ENST00000565519 1891 ntBASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAV1-1A0A0B4J248 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-1A0A0B4J248 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-1A0A0B4J248 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-1A0A0B4J248 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-1A0A0B4J248 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.08■□□□□ 0.64
TRAV1-1A0A0B4J248 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-1A0A0B4J248 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAV1-1A0A0B4J248 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-1A0A0B4J248 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.08■□□□□ 0.64
TRAV1-1A0A0B4J248 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-1A0A0B4J248 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-1A0A0B4J248 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-1A0A0B4J248 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV1-1A0A0B4J248 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-1A0A0B4J248 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-1A0A0B4J248 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-1A0A0B4J248 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-1A0A0B4J248 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-1A0A0B4J248 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 LINC01124-201ENST00000409786 2117 ntBASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 WHAMMP2-203ENST00000563942 1603 ntBASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-1A0A0B4J248 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-1A0A0B4J248 CLDN5-201ENST00000403084 2357 ntBASIC19.03■□□□□ 0.64
TRAV1-1A0A0B4J248 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-1A0A0B4J248 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
TRAV1-1A0A0B4J248 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAV1-1A0A0B4J248 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.02■□□□□ 0.63
TRAV1-1A0A0B4J248 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAV1-1A0A0B4J248 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 AC096887.2-201ENST00000623443 1957 ntBASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-1A0A0B4J248 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 AP003733.4-201ENST00000623785 1697 ntBASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-1A0A0B4J248 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 DUSP8P5-201ENST00000422884 1815 ntBASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV1-1A0A0B4J248 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV1-1A0A0B4J248 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAV1-1A0A0B4J248 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV1-1A0A0B4J248 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV1-1A0A0B4J248 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV1-1A0A0B4J248 AP002365.1-201ENST00000603448 772 ntBASIC18.97■□□□□ 0.63
TRAV1-1A0A0B4J248 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV1-1A0A0B4J248 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV1-1A0A0B4J248 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms