RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NISCHQ9Y2I1 1504 aa45.55■■■■■ 4.88
TRIM28-202ENST00000341753 SHROOM4Q9ULL8 1493 aa38.99■■■■□ 3.83
TRIM28-202ENST00000341753 CCDC180Q9P1Z9 1646 aa38.69■■■■□ 3.78
TRIM28-202ENST00000341753 ZCCHC6Q5VYS8 1495 aaKnown RBP38.44■■■■□ 3.74
TRIM28-202ENST00000341753 SUPT5HO00267 1087 aaKnown RBP38.28■■■■□ 3.72
TRIM28-202ENST00000341753 DCAF8L2P0C7V8 631 aa38.26■■■■□ 3.72
TRIM28-202ENST00000341753 MYO15BQ96JP2 1530 aa37.45■■■■□ 3.59
TRIM28-202ENST00000341753 HRCP23327 699 aa37.42■■■■□ 3.58
TRIM28-202ENST00000341753 CHIC1Q5VXU3 224 aa37.32■■■■□ 3.57
TRIM28-202ENST00000341753 DCAF1Q9Y4B6 1507 aa37.17■■■■□ 3.54
TRIM28-202ENST00000341753 PCGF6Q9BYE7 350 aa37.13■■■■□ 3.53
TRIM28-202ENST00000341753 PPARGC1BQ86YN6 1023 aaKnown RBP36.87■■■■□ 3.49
TRIM28-202ENST00000341753 SCRIBQ14160 1630 aa36.52■■■■□ 3.44
TRIM28-202ENST00000341753 LOC105371045A0A1W2PR82 267 aa36.5■■■■□ 3.43
TRIM28-202ENST00000341753 ABCC9O60706 1549 aa36.49■■■■□ 3.43
TRIM28-202ENST00000341753 RSF1Q96T23 1441 aaPredicted RBP36■■■■□ 3.35
TRIM28-202ENST00000341753 TRIM26Q12899 539 aaPredicted RBP35.98■■■■□ 3.35
TRIM28-202ENST00000341753 NACADO15069 1562 aa35.9■■■■□ 3.34
TRIM28-202ENST00000341753 CECR2Q9BXF3 1484 aa35.72■■■■□ 3.31
TRIM28-202ENST00000341753 RB1CC1Q8TDY2 1594 aa35.62■■■■□ 3.29
TRIM28-202ENST00000341753 MROH2BQ7Z745 1585 aa35.5■■■■□ 3.27
TRIM28-202ENST00000341753 FAM9AQ8IZU1 332 aaPredicted RBP35.46■■■■□ 3.27
TRIM28-202ENST00000341753 TRIM41Q8WV44 630 aa35.4■■■■□ 3.26
TRIM28-202ENST00000341753 EHMT2Q96KQ7 1210 aa35.39■■■■□ 3.26
TRIM28-202ENST00000341753 ZEB1P37275 1124 aaPredicted RBP35.35■■■■□ 3.25
TRIM28-202ENST00000341753 WIZO95785 1651 aa35.3■■■■□ 3.24
TRIM28-202ENST00000341753 SCAF1Q9H7N4 1312 aaKnown RBP35.09■■■■□ 3.21
TRIM28-202ENST00000341753 UNC13AQ9UPW8 1703 aa34.97■■■■□ 3.19
TRIM28-202ENST00000341753 PABPN1Q86U42 306 aaKnown RBP eCLIP34.97■■■■□ 3.191e-6■■□□□ 14.2
TRIM28-202ENST00000341753 BAZ1AQ9NRL2 1556 aaPredicted RBP34.96■■■■□ 3.19
TRIM28-202ENST00000341753 PELP1Q8IZL8 1130 aaKnown RBP34.84■■■■□ 3.17
TRIM28-202ENST00000341753 SMARCA4P51532 1647 aa34.75■■■■□ 3.15
TRIM28-202ENST00000341753 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.68■■■■□ 3.14
TRIM28-202ENST00000341753 TOP2AP11388 1531 aaKnown RBP34.6■■■■□ 3.13
TRIM28-202ENST00000341753 BICRAQ9NZM4 1560 aa34.57■■■■□ 3.13
TRIM28-202ENST00000341753 CCDC88BA6NC98 1476 aa34.57■■■■□ 3.12
TRIM28-202ENST00000341753 EIF4G1Q04637 1599 aaKnown RBP34.54■■■■□ 3.12
TRIM28-202ENST00000341753 CCER1Q8TC90 406 aaPredicted RBP34.53■■■■□ 3.12
TRIM28-202ENST00000341753 ABCC8Q09428 1581 aa34.47■■■■□ 3.11
TRIM28-202ENST00000341753 SMARCA2P51531 1590 aa34.46■■■■□ 3.11
TRIM28-202ENST00000341753 NEUROD1Q13562 356 aa34.4■■■■□ 3.1
TRIM28-202ENST00000341753 TTBK1Q5TCY1 1321 aaPredicted RBP34.39■■■■□ 3.1
TRIM28-202ENST00000341753 ACIN1Q9UKV3 1341 aaKnown RBP34.38■■■■□ 3.09
TRIM28-202ENST00000341753 DIEXFQ68CQ4 756 aaKnown RBP34.21■■■■□ 3.07
TRIM28-202ENST00000341753 GTF3C3Q9Y5Q9 886 aa34.13■■■■□ 3.05
TRIM28-202ENST00000341753 SOGA1O94964 1423 aa34.09■■■■□ 3.05
TRIM28-202ENST00000341753 CENPBP07199 599 aaPredicted RBP34■■■■□ 3.03
TRIM28-202ENST00000341753 RUSC2Q8N2Y8 1516 aa33.98■■■■□ 3.03
TRIM28-202ENST00000341753 ATAD2BQ9ULI0 1458 aa33.98■■■■□ 3.03
TRIM28-202ENST00000341753 PEG3Q9GZU2 1588 aa33.96■■■■□ 3.03
TRIM28-202ENST00000341753 BAZ1BQ9UIG0 1483 aaKnown RBP33.88■■■■□ 3.01
TRIM28-202ENST00000341753 CEP162Q5TB80 1403 aa33.87■■■■□ 3.01
TRIM28-202ENST00000341753 WRNQ14191 1432 aaPredicted RBP eCLIP33.82■■■■□ 3
TRIM28-202ENST00000341753 CSRNP3Q8WYN3 585 aa33.8■■■■□ 3
TRIM28-202ENST00000341753 UBTFP17480 764 aaKnown RBP33.75■■■□□ 2.99
TRIM28-202ENST00000341753 YTHDC1Q96MU7 727 aaKnown RBP33.73■■■□□ 2.99
TRIM28-202ENST00000341753 SYNJ1O43426 1573 aa33.69■■■□□ 2.98
TRIM28-202ENST00000341753 ZNF316A6NFI3 1004 aaPredicted RBP33.68■■■□□ 2.98
TRIM28-202ENST00000341753 TNIKQ9UKE5 1360 aa33.63■■■□□ 2.97
TRIM28-202ENST00000341753 EEA1Q15075 1411 aa33.56■■■□□ 2.96
TRIM28-202ENST00000341753 HNRNPUL2Q1KMD3 747 aaKnown RBP33.49■■■□□ 2.95
TRIM28-202ENST00000341753 GOLGA3Q08378 1498 aa33.45■■■□□ 2.95
TRIM28-202ENST00000341753 MIER1Q8N108 512 aa33.45■■■□□ 2.95
TRIM28-202ENST00000341753 RANGAP1P46060 587 aaPredicted RBP33.4■■■□□ 2.94
TRIM28-202ENST00000341753 NCAPD3P42695 1498 aa33.29■■■□□ 2.92
TRIM28-202ENST00000341753 CEP164Q9UPV0 1460 aa33.28■■■□□ 2.92
TRIM28-202ENST00000341753 RAPGEF2Q9Y4G8 1499 aa33.23■■■□□ 2.91
TRIM28-202ENST00000341753 HMGXB3Q12766 1538 aa33.2■■■□□ 2.9
TRIM28-202ENST00000341753 TOP2BQ02880 1626 aa33.19■■■□□ 2.9
TRIM28-202ENST00000341753 MYT1Q01538 1121 aa33.17■■■□□ 2.9
TRIM28-202ENST00000341753 KIF21BO75037 1637 aa33.17■■■□□ 2.9
TRIM28-202ENST00000341753 CLIP1P30622 1438 aa33.14■■■□□ 2.89
TRIM28-202ENST00000341753 CUX1P39880 1505 aa33.04■■■□□ 2.88
TRIM28-202ENST00000341753 BIVM-ERCC5R4GMW8 1640 aa33.03■■■□□ 2.88
TRIM28-202ENST00000341753 APLP2Q06481 763 aa33■■■□□ 2.87
TRIM28-202ENST00000341753 CFTRP13569 1480 aa32.97■■■□□ 2.87
TRIM28-202ENST00000341753 VPS8Q8N3P4 1428 aa32.94■■■□□ 2.86
TRIM28-202ENST00000341753 PRXQ9BXM0 1461 aa32.81■■■□□ 2.84
TRIM28-202ENST00000341753 KIF27Q86VH2 1401 aa32.76■■■□□ 2.84
TRIM28-202ENST00000341753 CC2D2AQ9P2K1 1620 aa32.73■■■□□ 2.83
TRIM28-202ENST00000341753 CADPSQ9ULU8 1353 aa32.71■■■□□ 2.83
TRIM28-202ENST00000341753 ERICH3Q5RHP9 1530 aa32.68■■■□□ 2.82
TRIM28-202ENST00000341753 DHX57Q6P158 1386 aaKnown RBP32.67■■■□□ 2.82
TRIM28-202ENST00000341753 ARAP1Q96P48 1450 aa32.63■■■□□ 2.81
TRIM28-202ENST00000341753 SUPT16HQ9Y5B9 1047 aaKnown RBP32.62■■■□□ 2.81
TRIM28-202ENST00000341753 CUX2O14529 1486 aa32.61■■■□□ 2.81
TRIM28-202ENST00000341753 KANK4Q5T7N3 995 aaPredicted RBP32.57■■■□□ 2.81
TRIM28-202ENST00000341753 PRDM2Q13029 1718 aa32.53■■■□□ 2.8
TRIM28-202ENST00000341753 FGD5Q6ZNL6 1462 aa32.52■■■□□ 2.8
TRIM28-202ENST00000341753 IGF1RP08069 1367 aa32.5■■■□□ 2.79
TRIM28-202ENST00000341753 CLSPNQ9HAW4 1339 aa32.49■■■□□ 2.79
TRIM28-202ENST00000341753 NESP48681 1621 aa32.45■■■□□ 2.78
TRIM28-202ENST00000341753 FANCD2Q9BXW9 1451 aa32.43■■■□□ 2.78
TRIM28-202ENST00000341753 ITGAEP38570 1179 aa32.42■■■□□ 2.78
TRIM28-202ENST00000341753 ARHGAP35Q9NRY4 1499 aa32.41■■■□□ 2.78
TRIM28-202ENST00000341753 CARMIL1Q5VZK9 1371 aa32.36■■■□□ 2.77
TRIM28-202ENST00000341753 KCNH8Q96L42 1107 aa32.35■■■□□ 2.77
TRIM28-202ENST00000341753 DNAJC5BQ9UF47 199 aa32.35■■■□□ 2.77
TRIM28-202ENST00000341753 RAD54L2Q9Y4B4 1467 aa32.33■■■□□ 2.77
TRIM28-202ENST00000341753 TSHZ2Q9NRE2 1034 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms