Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.61■■□□□ 1.85
KRT39Q6A163 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
KRT39Q6A163 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
KRT39Q6A163 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT39Q6A163 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.6■■□□□ 1.85
KRT39Q6A163 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT39Q6A163 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT39Q6A163 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT39Q6A163 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
KRT39Q6A163 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
KRT39Q6A163 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.58■■□□□ 1.85
KRT39Q6A163 AC060814.1-201ENST00000554326 538 ntBASIC26.58■■□□□ 1.85
KRT39Q6A163 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
KRT39Q6A163 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
KRT39Q6A163 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.57■■□□□ 1.84
KRT39Q6A163 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.57■■□□□ 1.84
KRT39Q6A163 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC26.57■■□□□ 1.84
KRT39Q6A163 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.57■■□□□ 1.84
KRT39Q6A163 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.57■■□□□ 1.84
KRT39Q6A163 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
KRT39Q6A163 AL359504.2-201ENST00000605506 1601 ntBASIC26.57■■□□□ 1.84
KRT39Q6A163 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
KRT39Q6A163 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.56■■□□□ 1.84
KRT39Q6A163 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
KRT39Q6A163 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC26.56■■□□□ 1.84
KRT39Q6A163 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
KRT39Q6A163 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.55■■□□□ 1.84
KRT39Q6A163 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
KRT39Q6A163 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
KRT39Q6A163 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT39Q6A163 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT39Q6A163 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
KRT39Q6A163 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.53■■□□□ 1.84
KRT39Q6A163 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT39Q6A163 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.53■■□□□ 1.84
KRT39Q6A163 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.53■■□□□ 1.84
KRT39Q6A163 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
KRT39Q6A163 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT39Q6A163 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT39Q6A163 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT39Q6A163 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
KRT39Q6A163 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT39Q6A163 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT39Q6A163 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.51■■□□□ 1.83
KRT39Q6A163 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.51■■□□□ 1.83
KRT39Q6A163 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
KRT39Q6A163 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
KRT39Q6A163 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
KRT39Q6A163 AC022413.1-201ENST00000624602 984 ntBASIC26.51■■□□□ 1.83
KRT39Q6A163 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
KRT39Q6A163 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
KRT39Q6A163 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 AL157400.5-201ENST00000507624 621 ntBASIC26.5■■□□□ 1.83
KRT39Q6A163 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.5■■□□□ 1.83
KRT39Q6A163 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.5■■□□□ 1.83
KRT39Q6A163 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT39Q6A163 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
KRT39Q6A163 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
KRT39Q6A163 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
KRT39Q6A163 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.49■■□□□ 1.83
KRT39Q6A163 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
KRT39Q6A163 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.49■■□□□ 1.83
KRT39Q6A163 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
KRT39Q6A163 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.49■■□□□ 1.83
KRT39Q6A163 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.48■■□□□ 1.83
KRT39Q6A163 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.48■■□□□ 1.83
KRT39Q6A163 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
KRT39Q6A163 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
KRT39Q6A163 AC092296.2-201ENST00000589470 999 ntBASIC26.47■■□□□ 1.83
KRT39Q6A163 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.47■■□□□ 1.83
KRT39Q6A163 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
KRT39Q6A163 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
KRT39Q6A163 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.46■■□□□ 1.83
KRT39Q6A163 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
KRT39Q6A163 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.46■■□□□ 1.83
KRT39Q6A163 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
KRT39Q6A163 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
KRT39Q6A163 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
KRT39Q6A163 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
KRT39Q6A163 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
KRT39Q6A163 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
KRT39Q6A163 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
KRT39Q6A163 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.44■■□□□ 1.82
KRT39Q6A163 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.44■■□□□ 1.82
KRT39Q6A163 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.44■■□□□ 1.82
KRT39Q6A163 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
KRT39Q6A163 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
KRT39Q6A163 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.43■■□□□ 1.82
KRT39Q6A163 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
KRT39Q6A163 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
KRT39Q6A163 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
KRT39Q6A163 GPX1-201ENST00000419349 1106 ntBASIC26.42■■□□□ 1.82
KRT39Q6A163 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
KRT39Q6A163 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms