Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.74■□□□□ 0.91
USF1P22415 AC093536.1-201ENST00000569153 554 ntBASIC20.74■□□□□ 0.91
USF1P22415 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
USF1P22415 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USF1P22415 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USF1P22415 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USF1P22415 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USF1P22415 BHLHE23-202ENST00000612929 1109 ntBASIC20.72■□□□□ 0.91
USF1P22415 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.72■□□□□ 0.91
USF1P22415 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.72■□□□□ 0.91
USF1P22415 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USF1P22415 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
USF1P22415 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USF1P22415 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USF1P22415 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
USF1P22415 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USF1P22415 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.7■□□□□ 0.9
USF1P22415 DUX4L9-201ENST00000449051 1259 ntBASIC20.7■□□□□ 0.9
USF1P22415 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.7■□□□□ 0.9
USF1P22415 MIR3960-201ENST00000583311 91 ntBASIC20.7■□□□□ 0.9
USF1P22415 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USF1P22415 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.69■□□□□ 0.9
USF1P22415 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 AP002414.2-202ENST00000590929 1450 ntBASIC20.69■□□□□ 0.9
USF1P22415 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USF1P22415 RAP2CP1-202ENST00000605179 643 ntBASIC20.68■□□□□ 0.9
USF1P22415 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
USF1P22415 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USF1P22415 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USF1P22415 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.67■□□□□ 0.9
USF1P22415 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USF1P22415 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USF1P22415 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
USF1P22415 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USF1P22415 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.66■□□□□ 0.9
USF1P22415 AC074183.2-201ENST00000623112 922 ntBASIC20.66■□□□□ 0.9
USF1P22415 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
USF1P22415 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.66■□□□□ 0.9
USF1P22415 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.65■□□□□ 0.9
USF1P22415 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USF1P22415 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF1P22415 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF1P22415 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.64■□□□□ 0.9
USF1P22415 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
USF1P22415 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
USF1P22415 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.63■□□□□ 0.89
USF1P22415 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF1P22415 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.63■□□□□ 0.89
USF1P22415 AC139795.1-202ENST00000500444 432 ntBASIC20.63■□□□□ 0.89
USF1P22415 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.63■□□□□ 0.89
USF1P22415 MIR6765-201ENST00000614092 87 ntBASIC20.63■□□□□ 0.89
USF1P22415 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF1P22415 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF1P22415 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USF1P22415 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.62■□□□□ 0.89
USF1P22415 AL035685.1-201ENST00000636663 812 ntBASIC20.62■□□□□ 0.89
USF1P22415 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.62■□□□□ 0.89
USF1P22415 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.61■□□□□ 0.89
USF1P22415 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USF1P22415 AC010980.1-201ENST00000587192 1142 ntBASIC20.61■□□□□ 0.89
USF1P22415 AC018755.3-202ENST00000596210 929 ntBASIC20.61■□□□□ 0.89
USF1P22415 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 SPCS2P3-201ENST00000500401 656 ntBASIC20.6■□□□□ 0.89
USF1P22415 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.6■□□□□ 0.89
USF1P22415 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 AL451085.2-201ENST00000605085 799 ntBASIC20.6■□□□□ 0.89
USF1P22415 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
USF1P22415 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.59■□□□□ 0.89
USF1P22415 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms