Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX6-3A6NJ46 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 AP004609.3-201ENST00000610705 1884 ntBASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 AC142472.1-201ENST00000612013 1741 ntBASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX6-3A6NJ46 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX6-3A6NJ46 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX6-3A6NJ46 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NKX6-3A6NJ46 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX6-3A6NJ46 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX6-3A6NJ46 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX6-3A6NJ46 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.54■□□□□ 0.88
NKX6-3A6NJ46 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NKX6-3A6NJ46 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX6-3A6NJ46 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX6-3A6NJ46 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX6-3A6NJ46 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 AL121749.1-202ENST00000609313 2153 ntBASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.53■□□□□ 0.88
NKX6-3A6NJ46 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
NKX6-3A6NJ46 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX6-3A6NJ46 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NKX6-3A6NJ46 AL157400.5-201ENST00000507624 621 ntBASIC20.52■□□□□ 0.88
NKX6-3A6NJ46 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.52■□□□□ 0.87
NKX6-3A6NJ46 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 AC092296.2-201ENST00000589470 999 ntBASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX6-3A6NJ46 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX6-3A6NJ46 ECEL1P2-201ENST00000461596 1295 ntBASIC20.49■□□□□ 0.87
NKX6-3A6NJ46 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX6-3A6NJ46 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX6-3A6NJ46 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.49■□□□□ 0.87
NKX6-3A6NJ46 AL359504.2-201ENST00000605506 1601 ntBASIC20.49■□□□□ 0.87
NKX6-3A6NJ46 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
NKX6-3A6NJ46 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NKX6-3A6NJ46 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX6-3A6NJ46 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
NKX6-3A6NJ46 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX6-3A6NJ46 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 HSD17B1P1-201ENST00000590052 955 ntBASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX6-3A6NJ46 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.46■□□□□ 0.87
NKX6-3A6NJ46 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.87
NKX6-3A6NJ46 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 RNF126P1-201ENST00000567452 1320 ntBASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NKX6-3A6NJ46 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX6-3A6NJ46 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
NKX6-3A6NJ46 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX6-3A6NJ46 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 SMPD5-203ENST00000639008 1464 ntBASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 MIR3960-201ENST00000583311 91 ntBASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NKX6-3A6NJ46 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NKX6-3A6NJ46 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms