Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.72■■□□□ 1.23
POLR2J3Q9H1A7 AP004609.3-201ENST00000610705 1884 ntBASIC22.72■■□□□ 1.23
POLR2J3Q9H1A7 WHAMMP3-201ENST00000611636 1609 ntBASIC22.71■■□□□ 1.23
POLR2J3Q9H1A7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
POLR2J3Q9H1A7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
POLR2J3Q9H1A7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
POLR2J3Q9H1A7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
POLR2J3Q9H1A7 AC142472.1-201ENST00000612013 1741 ntBASIC22.7■■□□□ 1.22
POLR2J3Q9H1A7 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
POLR2J3Q9H1A7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
POLR2J3Q9H1A7 AC020928.2-201ENST00000588717 2197 ntBASIC22.69■■□□□ 1.22
POLR2J3Q9H1A7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
POLR2J3Q9H1A7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.69■■□□□ 1.22
POLR2J3Q9H1A7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.69■■□□□ 1.22
POLR2J3Q9H1A7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.69■■□□□ 1.22
POLR2J3Q9H1A7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
POLR2J3Q9H1A7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
POLR2J3Q9H1A7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
POLR2J3Q9H1A7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.67■■□□□ 1.22
POLR2J3Q9H1A7 AC092803.2-201ENST00000564287 1899 ntBASIC22.66■■□□□ 1.22
POLR2J3Q9H1A7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
POLR2J3Q9H1A7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
POLR2J3Q9H1A7 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
POLR2J3Q9H1A7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.66■■□□□ 1.22
POLR2J3Q9H1A7 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
POLR2J3Q9H1A7 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.65■■□□□ 1.22
POLR2J3Q9H1A7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
POLR2J3Q9H1A7 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
POLR2J3Q9H1A7 DUSP8P4-201ENST00000399538 1761 ntBASIC22.64■■□□□ 1.22
POLR2J3Q9H1A7 LINC01971-201ENST00000617888 1048 ntBASIC22.64■■□□□ 1.21
POLR2J3Q9H1A7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
POLR2J3Q9H1A7 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
POLR2J3Q9H1A7 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
POLR2J3Q9H1A7 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
POLR2J3Q9H1A7 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.63■■□□□ 1.21
POLR2J3Q9H1A7 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
POLR2J3Q9H1A7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.62■■□□□ 1.21
POLR2J3Q9H1A7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
POLR2J3Q9H1A7 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.62■■□□□ 1.21
POLR2J3Q9H1A7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
POLR2J3Q9H1A7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
POLR2J3Q9H1A7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
POLR2J3Q9H1A7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
POLR2J3Q9H1A7 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
POLR2J3Q9H1A7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
POLR2J3Q9H1A7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
POLR2J3Q9H1A7 AC008813.1-201ENST00000536597 885 ntBASIC22.58■■□□□ 1.21
POLR2J3Q9H1A7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
POLR2J3Q9H1A7 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
POLR2J3Q9H1A7 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L13-201ENST00000554103 1267 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L15-201ENST00000611059 1267 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L23-201ENST00000615195 1269 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L24-201ENST00000617576 1269 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L22-201ENST00000618238 1269 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L20-201ENST00000619712 1269 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L21-201ENST00000622058 1269 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L10-201ENST00000622460 1267 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 DUX4L25-201ENST00000624915 1269 ntBASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
POLR2J3Q9H1A7 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
POLR2J3Q9H1A7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.55■■□□□ 1.2
POLR2J3Q9H1A7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
POLR2J3Q9H1A7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
POLR2J3Q9H1A7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms