Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC020928.2-201ENST00000588717 2197 ntBASIC23.92■■□□□ 1.42
FOXA1P55317 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.92■■□□□ 1.42
FOXA1P55317 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
FOXA1P55317 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
FOXA1P55317 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
FOXA1P55317 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
FOXA1P55317 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.92■■□□□ 1.42
FOXA1P55317 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
FOXA1P55317 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
FOXA1P55317 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
FOXA1P55317 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.91■■□□□ 1.42
FOXA1P55317 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
FOXA1P55317 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.91■■□□□ 1.42
FOXA1P55317 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
FOXA1P55317 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.91■■□□□ 1.42
FOXA1P55317 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
FOXA1P55317 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
FOXA1P55317 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
FOXA1P55317 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
FOXA1P55317 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.9■■□□□ 1.42
FOXA1P55317 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
FOXA1P55317 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
FOXA1P55317 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
FOXA1P55317 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.89■■□□□ 1.42
FOXA1P55317 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
FOXA1P55317 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.89■■□□□ 1.41
FOXA1P55317 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
FOXA1P55317 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.89■■□□□ 1.41
FOXA1P55317 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.88■■□□□ 1.41
FOXA1P55317 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.88■■□□□ 1.41
FOXA1P55317 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
FOXA1P55317 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.88■■□□□ 1.41
FOXA1P55317 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.88■■□□□ 1.41
FOXA1P55317 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
FOXA1P55317 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
FOXA1P55317 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.87■■□□□ 1.41
FOXA1P55317 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
FOXA1P55317 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
FOXA1P55317 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
FOXA1P55317 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
FOXA1P55317 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
FOXA1P55317 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
FOXA1P55317 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
FOXA1P55317 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
FOXA1P55317 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
FOXA1P55317 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
FOXA1P55317 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
FOXA1P55317 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
FOXA1P55317 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
FOXA1P55317 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.85■■□□□ 1.41
FOXA1P55317 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.85■■□□□ 1.41
FOXA1P55317 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
FOXA1P55317 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
FOXA1P55317 LINC01971-201ENST00000617888 1048 ntBASIC23.85■■□□□ 1.41
FOXA1P55317 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
FOXA1P55317 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
FOXA1P55317 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.84■■□□□ 1.41
FOXA1P55317 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
FOXA1P55317 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
FOXA1P55317 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXA1P55317 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXA1P55317 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
FOXA1P55317 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.83■■□□□ 1.41
FOXA1P55317 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.83■■□□□ 1.4
FOXA1P55317 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.82■■□□□ 1.4
FOXA1P55317 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
FOXA1P55317 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXA1P55317 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
FOXA1P55317 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
FOXA1P55317 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
FOXA1P55317 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L13-201ENST00000554103 1267 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L15-201ENST00000611059 1267 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L23-201ENST00000615195 1269 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L24-201ENST00000617576 1269 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L22-201ENST00000618238 1269 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L20-201ENST00000619712 1269 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L21-201ENST00000622058 1269 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L10-201ENST00000622460 1267 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 DUX4L25-201ENST00000624915 1269 ntBASIC23.81■■□□□ 1.4
FOXA1P55317 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
FOXA1P55317 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
FOXA1P55317 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXA1P55317 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
FOXA1P55317 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.8■■□□□ 1.4
FOXA1P55317 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
FOXA1P55317 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXA1P55317 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXA1P55317 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
FOXA1P55317 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.79■■□□□ 1.4
FOXA1P55317 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXA1P55317 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
FOXA1P55317 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXA1P55317 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXA1P55317 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
FOXA1P55317 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
FOXA1P55317 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
FOXA1P55317 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.78■■□□□ 1.4
FOXA1P55317 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
FOXA1P55317 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms