Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
LMX1BO60663 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LMX1BO60663 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LMX1BO60663 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1BO60663 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1BO60663 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.69■■□□□ 1.06
LMX1BO60663 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.69■■□□□ 1.06
LMX1BO60663 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
LMX1BO60663 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1BO60663 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1BO60663 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.68■■□□□ 1.06
LMX1BO60663 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1BO60663 AC091060.1-201ENST00000623524 1766 ntBASIC21.68■■□□□ 1.06
LMX1BO60663 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1BO60663 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
LMX1BO60663 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.67■■□□□ 1.06
LMX1BO60663 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
LMX1BO60663 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1BO60663 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1BO60663 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.65■■□□□ 1.06
LMX1BO60663 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.65■■□□□ 1.06
LMX1BO60663 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
LMX1BO60663 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1BO60663 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
LMX1BO60663 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.63■■□□□ 1.05
LMX1BO60663 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.63■■□□□ 1.05
LMX1BO60663 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1BO60663 AC110285.7-201ENST00000624417 1536 ntBASIC21.63■■□□□ 1.05
LMX1BO60663 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
LMX1BO60663 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.62■■□□□ 1.05
LMX1BO60663 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1BO60663 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1BO60663 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1BO60663 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1BO60663 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
LMX1BO60663 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.62■■□□□ 1.05
LMX1BO60663 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.61■■□□□ 1.05
LMX1BO60663 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1BO60663 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.61■■□□□ 1.05
LMX1BO60663 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.61■■□□□ 1.05
LMX1BO60663 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1BO60663 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.6■■□□□ 1.05
LMX1BO60663 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.6■■□□□ 1.05
LMX1BO60663 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.6■■□□□ 1.05
LMX1BO60663 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
LMX1BO60663 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
LMX1BO60663 AC135731.1-201ENST00000569415 2548 ntBASIC21.59■■□□□ 1.05
LMX1BO60663 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1BO60663 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1BO60663 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
LMX1BO60663 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1BO60663 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.59■■□□□ 1.05
LMX1BO60663 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.59■■□□□ 1.05
LMX1BO60663 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LMX1BO60663 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LMX1BO60663 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LMX1BO60663 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.58■■□□□ 1.05
LMX1BO60663 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.58■■□□□ 1.05
LMX1BO60663 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.58■■□□□ 1.05
LMX1BO60663 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LMX1BO60663 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LMX1BO60663 RARRES2P2-201ENST00000394842 485 ntBASIC21.57■■□□□ 1.04
LMX1BO60663 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LMX1BO60663 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LMX1BO60663 AP004609.3-201ENST00000610705 1884 ntBASIC21.56■■□□□ 1.04
LMX1BO60663 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.56■■□□□ 1.04
LMX1BO60663 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
LMX1BO60663 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
LMX1BO60663 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.55■■□□□ 1.04
LMX1BO60663 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1BO60663 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1BO60663 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1BO60663 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1BO60663 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.55■■□□□ 1.04
LMX1BO60663 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1BO60663 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.54■■□□□ 1.04
LMX1BO60663 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.54■■□□□ 1.04
LMX1BO60663 ABHD17AP5-201ENST00000580133 923 ntBASIC21.54■■□□□ 1.04
LMX1BO60663 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.54■■□□□ 1.04
LMX1BO60663 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.54■■□□□ 1.04
LMX1BO60663 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1BO60663 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.54■■□□□ 1.04
LMX1BO60663 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1BO60663 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1BO60663 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LMX1BO60663 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LMX1BO60663 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.53■■□□□ 1.04
LMX1BO60663 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1BO60663 GPX1-201ENST00000419349 1106 ntBASIC21.52■■□□□ 1.04
LMX1BO60663 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.52■■□□□ 1.04
LMX1BO60663 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms