Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC28.66■■■□□ 2.18
SMCHD1A6NHR9 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMCHD1A6NHR9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMCHD1A6NHR9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.65■■■□□ 2.18
SMCHD1A6NHR9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC28.65■■■□□ 2.18
SMCHD1A6NHR9 AL359258.2-201ENST00000564063 1566 ntBASIC28.65■■■□□ 2.18
SMCHD1A6NHR9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SMCHD1A6NHR9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SMCHD1A6NHR9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
SMCHD1A6NHR9 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.17
SMCHD1A6NHR9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC28.63■■■□□ 2.17
SMCHD1A6NHR9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SMCHD1A6NHR9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SMCHD1A6NHR9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SMCHD1A6NHR9 RARRES2P1-201ENST00000474487 481 ntBASIC28.63■■■□□ 2.17
SMCHD1A6NHR9 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SMCHD1A6NHR9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.62■■■□□ 2.17
SMCHD1A6NHR9 ATP5G2P3-201ENST00000429083 425 ntBASIC28.61■■■□□ 2.17
SMCHD1A6NHR9 AC126177.7-201ENST00000547904 679 ntBASIC28.61■■■□□ 2.17
SMCHD1A6NHR9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
SMCHD1A6NHR9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.61■■■□□ 2.17
SMCHD1A6NHR9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC28.6■■■□□ 2.17
SMCHD1A6NHR9 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.6■■■□□ 2.17
SMCHD1A6NHR9 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMCHD1A6NHR9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMCHD1A6NHR9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.6■■■□□ 2.17
SMCHD1A6NHR9 AC007029.1-201ENST00000604183 313 ntBASIC28.6■■■□□ 2.17
SMCHD1A6NHR9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SMCHD1A6NHR9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
SMCHD1A6NHR9 WHAMMP3-201ENST00000611636 1609 ntBASIC28.59■■■□□ 2.17
SMCHD1A6NHR9 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 AC093536.1-201ENST00000569153 554 ntBASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SMCHD1A6NHR9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMCHD1A6NHR9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
SMCHD1A6NHR9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SMCHD1A6NHR9 LINC01003-201ENST00000564834 1764 ntBASIC28.56■■■□□ 2.16
SMCHD1A6NHR9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
SMCHD1A6NHR9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMCHD1A6NHR9 AL592293.1-201ENST00000502889 1188 ntBASIC28.54■■■□□ 2.16
SMCHD1A6NHR9 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMCHD1A6NHR9 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMCHD1A6NHR9 RAP2CP1-202ENST00000605179 643 ntBASIC28.53■■■□□ 2.16
SMCHD1A6NHR9 AC129492.7-201ENST00000622992 756 ntBASIC28.53■■■□□ 2.16
SMCHD1A6NHR9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
SMCHD1A6NHR9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SMCHD1A6NHR9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC28.53■■■□□ 2.16
SMCHD1A6NHR9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 AC009831.1-201ENST00000580420 1582 ntBASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 AC133552.2-201ENST00000619106 1032 ntBASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 SMPD5-203ENST00000639008 1464 ntBASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
SMCHD1A6NHR9 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SMCHD1A6NHR9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
SMCHD1A6NHR9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SMCHD1A6NHR9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.5■■■□□ 2.15
SMCHD1A6NHR9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
SMCHD1A6NHR9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
SMCHD1A6NHR9 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SMCHD1A6NHR9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.48■■■□□ 2.15
SMCHD1A6NHR9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
SMCHD1A6NHR9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
SMCHD1A6NHR9 AL359504.2-201ENST00000605506 1601 ntBASIC28.47■■■□□ 2.15
SMCHD1A6NHR9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.47■■■□□ 2.15
SMCHD1A6NHR9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SMCHD1A6NHR9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SMCHD1A6NHR9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SMCHD1A6NHR9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
SMCHD1A6NHR9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.15
SMCHD1A6NHR9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
SMCHD1A6NHR9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.14
SMCHD1A6NHR9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SMCHD1A6NHR9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC28.44■■■□□ 2.14
SMCHD1A6NHR9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SMCHD1A6NHR9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SMCHD1A6NHR9 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
SMCHD1A6NHR9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SMCHD1A6NHR9 SPCS2P3-201ENST00000500401 656 ntBASIC28.42■■■□□ 2.14
SMCHD1A6NHR9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SMCHD1A6NHR9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms