Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA3Q9Y5H8 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.07■■□□□ 1.76
PCDHA3Q9Y5H8 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
PCDHA3Q9Y5H8 AC021231.2-201ENST00000594613 730 ntBASIC26.07■■□□□ 1.76
PCDHA3Q9Y5H8 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA3Q9Y5H8 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA3Q9Y5H8 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.06■■□□□ 1.76
PCDHA3Q9Y5H8 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA3Q9Y5H8 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA3Q9Y5H8 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.06■■□□□ 1.76
PCDHA3Q9Y5H8 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA3Q9Y5H8 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHA3Q9Y5H8 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHA3Q9Y5H8 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
PCDHA3Q9Y5H8 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.03■■□□□ 1.76
PCDHA3Q9Y5H8 AP004609.3-201ENST00000610705 1884 ntBASIC26.03■■□□□ 1.76
PCDHA3Q9Y5H8 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHA3Q9Y5H8 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.03■■□□□ 1.76
PCDHA3Q9Y5H8 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.02■■□□□ 1.76
PCDHA3Q9Y5H8 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA3Q9Y5H8 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
PCDHA3Q9Y5H8 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.02■■□□□ 1.76
PCDHA3Q9Y5H8 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA3Q9Y5H8 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA3Q9Y5H8 DUX4L29-201ENST00000425409 679 ntBASIC26.01■■□□□ 1.75
PCDHA3Q9Y5H8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.01■■□□□ 1.75
PCDHA3Q9Y5H8 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 AC145676.1-201ENST00000514988 2004 ntBASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHA3Q9Y5H8 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.99■■□□□ 1.75
PCDHA3Q9Y5H8 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PCDHA3Q9Y5H8 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.99■■□□□ 1.75
PCDHA3Q9Y5H8 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PCDHA3Q9Y5H8 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.98■■□□□ 1.75
PCDHA3Q9Y5H8 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
PCDHA3Q9Y5H8 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA3Q9Y5H8 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA3Q9Y5H8 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHA3Q9Y5H8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHA3Q9Y5H8 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHA3Q9Y5H8 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHA3Q9Y5H8 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHA3Q9Y5H8 WHAMMP3-201ENST00000611636 1609 ntBASIC25.96■■□□□ 1.75
PCDHA3Q9Y5H8 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.94■■□□□ 1.74
PCDHA3Q9Y5H8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.93■■□□□ 1.74
PCDHA3Q9Y5H8 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA3Q9Y5H8 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA3Q9Y5H8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.92■■□□□ 1.74
PCDHA3Q9Y5H8 AC142472.1-201ENST00000612013 1741 ntBASIC25.92■■□□□ 1.74
PCDHA3Q9Y5H8 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA3Q9Y5H8 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA3Q9Y5H8 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.92■■□□□ 1.74
PCDHA3Q9Y5H8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA3Q9Y5H8 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA3Q9Y5H8 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA3Q9Y5H8 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.91■■□□□ 1.74
PCDHA3Q9Y5H8 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA3Q9Y5H8 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA3Q9Y5H8 AC092803.2-201ENST00000564287 1899 ntBASIC25.91■■□□□ 1.74
PCDHA3Q9Y5H8 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA3Q9Y5H8 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.9■■□□□ 1.74
PCDHA3Q9Y5H8 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA3Q9Y5H8 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.9■■□□□ 1.74
PCDHA3Q9Y5H8 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHA3Q9Y5H8 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.89■■□□□ 1.73
PCDHA3Q9Y5H8 DUSP8P4-201ENST00000399538 1761 ntBASIC25.89■■□□□ 1.73
PCDHA3Q9Y5H8 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
PCDHA3Q9Y5H8 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
PCDHA3Q9Y5H8 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHA3Q9Y5H8 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
PCDHA3Q9Y5H8 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
PCDHA3Q9Y5H8 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.86■■□□□ 1.73
PCDHA3Q9Y5H8 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA3Q9Y5H8 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA3Q9Y5H8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.86■■□□□ 1.73
PCDHA3Q9Y5H8 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA3Q9Y5H8 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA3Q9Y5H8 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.84■■□□□ 1.73
PCDHA3Q9Y5H8 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA3Q9Y5H8 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.84■■□□□ 1.73
PCDHA3Q9Y5H8 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA3Q9Y5H8 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA3Q9Y5H8 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.83■■□□□ 1.73
PCDHA3Q9Y5H8 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA3Q9Y5H8 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA3Q9Y5H8 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
PCDHA3Q9Y5H8 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms