Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RHBDD3Q9Y3P4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RHBDD3Q9Y3P4 AL449106.1-201ENST00000608517 1980 ntBASIC21.69■■□□□ 1.06
RHBDD3Q9Y3P4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RHBDD3Q9Y3P4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RHBDD3Q9Y3P4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RHBDD3Q9Y3P4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RHBDD3Q9Y3P4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDD3Q9Y3P4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RHBDD3Q9Y3P4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RHBDD3Q9Y3P4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 AC110285.7-201ENST00000624417 1536 ntBASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
RHBDD3Q9Y3P4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.66■■□□□ 1.06
RHBDD3Q9Y3P4 AC091060.1-201ENST00000623524 1766 ntBASIC21.66■■□□□ 1.06
RHBDD3Q9Y3P4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RHBDD3Q9Y3P4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.66■■□□□ 1.06
RHBDD3Q9Y3P4 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RHBDD3Q9Y3P4 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDD3Q9Y3P4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDD3Q9Y3P4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDD3Q9Y3P4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDD3Q9Y3P4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.65■■□□□ 1.06
RHBDD3Q9Y3P4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
RHBDD3Q9Y3P4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RHBDD3Q9Y3P4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RHBDD3Q9Y3P4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDD3Q9Y3P4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDD3Q9Y3P4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RHBDD3Q9Y3P4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RHBDD3Q9Y3P4 AC135731.1-201ENST00000569415 2548 ntBASIC21.63■■□□□ 1.05
RHBDD3Q9Y3P4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
RHBDD3Q9Y3P4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RHBDD3Q9Y3P4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RHBDD3Q9Y3P4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RHBDD3Q9Y3P4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.62■■□□□ 1.05
RHBDD3Q9Y3P4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RHBDD3Q9Y3P4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
RHBDD3Q9Y3P4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RHBDD3Q9Y3P4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
RHBDD3Q9Y3P4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.61■■□□□ 1.05
RHBDD3Q9Y3P4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 LINC01971-201ENST00000617888 1048 ntBASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RHBDD3Q9Y3P4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.59■■□□□ 1.05
RHBDD3Q9Y3P4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RHBDD3Q9Y3P4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.59■■□□□ 1.05
RHBDD3Q9Y3P4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.59■■□□□ 1.05
RHBDD3Q9Y3P4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
RHBDD3Q9Y3P4 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RHBDD3Q9Y3P4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RHBDD3Q9Y3P4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RHBDD3Q9Y3P4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RHBDD3Q9Y3P4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RHBDD3Q9Y3P4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RHBDD3Q9Y3P4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.57■■□□□ 1.04
RHBDD3Q9Y3P4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RHBDD3Q9Y3P4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.57■■□□□ 1.04
RHBDD3Q9Y3P4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.57■■□□□ 1.04
RHBDD3Q9Y3P4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RHBDD3Q9Y3P4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RHBDD3Q9Y3P4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RHBDD3Q9Y3P4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.55■■□□□ 1.04
RHBDD3Q9Y3P4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RHBDD3Q9Y3P4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RHBDD3Q9Y3P4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RHBDD3Q9Y3P4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.54■■□□□ 1.04
RHBDD3Q9Y3P4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
RHBDD3Q9Y3P4 ZNRF2P2-203ENST00000454624 420 ntBASIC21.54■■□□□ 1.04
RHBDD3Q9Y3P4 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
RHBDD3Q9Y3P4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.54■■□□□ 1.04
RHBDD3Q9Y3P4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.54■■□□□ 1.04
RHBDD3Q9Y3P4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.53■■□□□ 1.04
RHBDD3Q9Y3P4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms