Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 DUX4L20-201ENST00000619712 1269 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L21-201ENST00000622058 1269 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L10-201ENST00000622460 1267 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L25-201ENST00000624915 1269 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SIX2Q9NPC8 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SIX2Q9NPC8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.93■■□□□ 1.9
SIX2Q9NPC8 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
SIX2Q9NPC8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SIX2Q9NPC8 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.93■■□□□ 1.9
SIX2Q9NPC8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SIX2Q9NPC8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.92■■□□□ 1.9
SIX2Q9NPC8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SIX2Q9NPC8 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
SIX2Q9NPC8 DUX4L11-201ENST00000611504 1267 ntBASIC26.91■■□□□ 1.9
SIX2Q9NPC8 DUX4L12-201ENST00000614593 1267 ntBASIC26.91■■□□□ 1.9
SIX2Q9NPC8 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.91■■□□□ 1.9
SIX2Q9NPC8 DUX4L14-201ENST00000621227 1267 ntBASIC26.91■■□□□ 1.9
SIX2Q9NPC8 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SIX2Q9NPC8 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SIX2Q9NPC8 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SIX2Q9NPC8 ZNRF2P2-203ENST00000454624 420 ntBASIC26.9■■□□□ 1.9
SIX2Q9NPC8 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.9■■□□□ 1.9
SIX2Q9NPC8 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SIX2Q9NPC8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SIX2Q9NPC8 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
SIX2Q9NPC8 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.89■■□□□ 1.89
SIX2Q9NPC8 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
SIX2Q9NPC8 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
SIX2Q9NPC8 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SIX2Q9NPC8 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.88■■□□□ 1.89
SIX2Q9NPC8 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
SIX2Q9NPC8 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SIX2Q9NPC8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.87■■□□□ 1.89
SIX2Q9NPC8 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
SIX2Q9NPC8 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SIX2Q9NPC8 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SIX2Q9NPC8 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SIX2Q9NPC8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SIX2Q9NPC8 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
SIX2Q9NPC8 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SIX2Q9NPC8 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.85■■□□□ 1.89
SIX2Q9NPC8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
SIX2Q9NPC8 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SIX2Q9NPC8 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SIX2Q9NPC8 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.84■■□□□ 1.89
SIX2Q9NPC8 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SIX2Q9NPC8 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SIX2Q9NPC8 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SIX2Q9NPC8 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
SIX2Q9NPC8 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.83■■□□□ 1.89
SIX2Q9NPC8 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
SIX2Q9NPC8 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
SIX2Q9NPC8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
SIX2Q9NPC8 WHAMMP3-201ENST00000611636 1609 ntBASIC26.83■■□□□ 1.88
SIX2Q9NPC8 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SIX2Q9NPC8 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SIX2Q9NPC8 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SIX2Q9NPC8 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.81■■□□□ 1.88
SIX2Q9NPC8 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SIX2Q9NPC8 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.81■■□□□ 1.88
SIX2Q9NPC8 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.8■■□□□ 1.88
SIX2Q9NPC8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SIX2Q9NPC8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.79■■□□□ 1.88
SIX2Q9NPC8 AP004609.3-201ENST00000610705 1884 ntBASIC26.79■■□□□ 1.88
SIX2Q9NPC8 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC26.79■■□□□ 1.88
SIX2Q9NPC8 ABHD17AP4-201ENST00000411545 909 ntBASIC26.79■■□□□ 1.88
SIX2Q9NPC8 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SIX2Q9NPC8 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SIX2Q9NPC8 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
SIX2Q9NPC8 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.78■■□□□ 1.88
SIX2Q9NPC8 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.78■■□□□ 1.88
SIX2Q9NPC8 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.77■■□□□ 1.88
SIX2Q9NPC8 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SIX2Q9NPC8 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.77■■□□□ 1.88
SIX2Q9NPC8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
SIX2Q9NPC8 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.76■■□□□ 1.87
SIX2Q9NPC8 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SIX2Q9NPC8 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SIX2Q9NPC8 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC26.75■■□□□ 1.87
SIX2Q9NPC8 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SIX2Q9NPC8 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.75■■□□□ 1.87
SIX2Q9NPC8 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SIX2Q9NPC8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.75■■□□□ 1.87
SIX2Q9NPC8 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
SIX2Q9NPC8 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
SIX2Q9NPC8 AC091060.1-201ENST00000623524 1766 ntBASIC26.74■■□□□ 1.87
SIX2Q9NPC8 HLA-V-202ENST00000446817 847 ntBASIC26.74■■□□□ 1.87
SIX2Q9NPC8 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.74■■□□□ 1.87
SIX2Q9NPC8 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SIX2Q9NPC8 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
SIX2Q9NPC8 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.74■■□□□ 1.87
SIX2Q9NPC8 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SIX2Q9NPC8 CR559946.2-201ENST00000623684 991 ntBASIC26.73■■□□□ 1.87
SIX2Q9NPC8 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SIX2Q9NPC8 AC142472.1-201ENST00000612013 1741 ntBASIC26.73■■□□□ 1.87
SIX2Q9NPC8 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.72■■□□□ 1.87
SIX2Q9NPC8 AC008813.1-201ENST00000536597 885 ntBASIC26.72■■□□□ 1.87
SIX2Q9NPC8 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.72■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms