Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
LRRK1Q38SD2 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
LRRK1Q38SD2 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
LRRK1Q38SD2 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
LRRK1Q38SD2 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
LRRK1Q38SD2 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
LRRK1Q38SD2 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
LRRK1Q38SD2 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
LRRK1Q38SD2 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.96■■□□□ 1.59
LRRK1Q38SD2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.96■■□□□ 1.59
LRRK1Q38SD2 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
LRRK1Q38SD2 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
LRRK1Q38SD2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.95■■□□□ 1.58
LRRK1Q38SD2 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.94■■□□□ 1.58
LRRK1Q38SD2 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.58
LRRK1Q38SD2 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.94■■□□□ 1.58
LRRK1Q38SD2 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.94■■□□□ 1.58
LRRK1Q38SD2 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
LRRK1Q38SD2 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
LRRK1Q38SD2 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
LRRK1Q38SD2 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
LRRK1Q38SD2 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC24.93■■□□□ 1.58
LRRK1Q38SD2 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
LRRK1Q38SD2 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
LRRK1Q38SD2 ABHD17AP5-201ENST00000580133 923 ntBASIC24.92■■□□□ 1.58
LRRK1Q38SD2 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.92■■□□□ 1.58
LRRK1Q38SD2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.91■■□□□ 1.58
LRRK1Q38SD2 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
LRRK1Q38SD2 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
LRRK1Q38SD2 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.91■■□□□ 1.58
LRRK1Q38SD2 LINC01003-201ENST00000564834 1764 ntBASIC24.91■■□□□ 1.58
LRRK1Q38SD2 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
LRRK1Q38SD2 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
LRRK1Q38SD2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
LRRK1Q38SD2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
LRRK1Q38SD2 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
LRRK1Q38SD2 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
LRRK1Q38SD2 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.89■■□□□ 1.57
LRRK1Q38SD2 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
LRRK1Q38SD2 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
LRRK1Q38SD2 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.88■■□□□ 1.57
LRRK1Q38SD2 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
LRRK1Q38SD2 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
LRRK1Q38SD2 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
LRRK1Q38SD2 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
LRRK1Q38SD2 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
LRRK1Q38SD2 AC025884.2-201ENST00000553429 711 ntBASIC24.86■■□□□ 1.57
LRRK1Q38SD2 WHAMMP3-201ENST00000611636 1609 ntBASIC24.86■■□□□ 1.57
LRRK1Q38SD2 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
LRRK1Q38SD2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
LRRK1Q38SD2 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LRRK1Q38SD2 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.86■■□□□ 1.57
LRRK1Q38SD2 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LRRK1Q38SD2 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
LRRK1Q38SD2 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRK1Q38SD2 RNF126P1-201ENST00000567452 1320 ntBASIC24.85■■□□□ 1.57
LRRK1Q38SD2 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
LRRK1Q38SD2 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
LRRK1Q38SD2 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.84■■□□□ 1.57
LRRK1Q38SD2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
LRRK1Q38SD2 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
LRRK1Q38SD2 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
LRRK1Q38SD2 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
LRRK1Q38SD2 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
LRRK1Q38SD2 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
LRRK1Q38SD2 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
LRRK1Q38SD2 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.82■■□□□ 1.56
LRRK1Q38SD2 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
LRRK1Q38SD2 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
LRRK1Q38SD2 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
LRRK1Q38SD2 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.8■■□□□ 1.56
LRRK1Q38SD2 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.8■■□□□ 1.56
LRRK1Q38SD2 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.8■■□□□ 1.56
LRRK1Q38SD2 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.8■■□□□ 1.56
LRRK1Q38SD2 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
LRRK1Q38SD2 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRRK1Q38SD2 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
LRRK1Q38SD2 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
LRRK1Q38SD2 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRRK1Q38SD2 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.77■■□□□ 1.56
LRRK1Q38SD2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRRK1Q38SD2 AC126177.7-201ENST00000547904 679 ntBASIC24.76■■□□□ 1.55
LRRK1Q38SD2 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LRRK1Q38SD2 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRRK1Q38SD2 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRRK1Q38SD2 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.75■■□□□ 1.55
LRRK1Q38SD2 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms