Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
HADHAP40939 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.18■■□□□ 1.62
HADHAP40939 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
HADHAP40939 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
HADHAP40939 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HADHAP40939 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
HADHAP40939 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.18■■□□□ 1.62
HADHAP40939 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.18■■□□□ 1.62
HADHAP40939 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
HADHAP40939 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
HADHAP40939 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HADHAP40939 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HADHAP40939 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
HADHAP40939 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
HADHAP40939 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.16■■□□□ 1.62
HADHAP40939 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.16■■□□□ 1.62
HADHAP40939 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
HADHAP40939 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.15■■□□□ 1.62
HADHAP40939 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HADHAP40939 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.15■■□□□ 1.62
HADHAP40939 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.15■■□□□ 1.62
HADHAP40939 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HADHAP40939 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HADHAP40939 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
HADHAP40939 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
HADHAP40939 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.14■■□□□ 1.61
HADHAP40939 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HADHAP40939 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.13■■□□□ 1.61
HADHAP40939 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
HADHAP40939 AC008813.1-201ENST00000536597 885 ntBASIC25.13■■□□□ 1.61
HADHAP40939 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
HADHAP40939 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
HADHAP40939 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HADHAP40939 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HADHAP40939 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
HADHAP40939 CR559946.2-201ENST00000623684 991 ntBASIC25.11■■□□□ 1.61
HADHAP40939 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HADHAP40939 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
HADHAP40939 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
HADHAP40939 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
HADHAP40939 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
HADHAP40939 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
HADHAP40939 MIR3648-2-201ENST00000581792 180 ntBASIC25.1■■□□□ 1.61
HADHAP40939 MIR3648-1-201ENST00000615959 180 ntBASIC25.1■■□□□ 1.61
HADHAP40939 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.1■■□□□ 1.61
HADHAP40939 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.08■■□□□ 1.61
HADHAP40939 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.08■■□□□ 1.61
HADHAP40939 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HADHAP40939 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
HADHAP40939 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HADHAP40939 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HADHAP40939 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.07■■□□□ 1.6
HADHAP40939 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HADHAP40939 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.07■■□□□ 1.6
HADHAP40939 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
HADHAP40939 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HADHAP40939 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HADHAP40939 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.06■■□□□ 1.6
HADHAP40939 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
HADHAP40939 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.06■■□□□ 1.6
HADHAP40939 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
HADHAP40939 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
HADHAP40939 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HADHAP40939 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HADHAP40939 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HADHAP40939 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HADHAP40939 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HADHAP40939 AC016575.1-201ENST00000607026 382 ntBASIC25.03■■□□□ 1.6
HADHAP40939 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.02■■□□□ 1.6
HADHAP40939 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.02■■□□□ 1.6
HADHAP40939 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
HADHAP40939 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.01■■□□□ 1.59
HADHAP40939 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.01■■□□□ 1.59
HADHAP40939 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
HADHAP40939 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HADHAP40939 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
HADHAP40939 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HADHAP40939 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HADHAP40939 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25■■□□□ 1.59
HADHAP40939 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HADHAP40939 AC148477.6-201ENST00000623746 465 ntBASIC25■■□□□ 1.59
HADHAP40939 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HADHAP40939 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HADHAP40939 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
HADHAP40939 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.99■■□□□ 1.59
HADHAP40939 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HADHAP40939 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
HADHAP40939 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
HADHAP40939 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HADHAP40939 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HADHAP40939 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.97■■□□□ 1.59
HADHAP40939 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
HADHAP40939 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.97■■□□□ 1.59
HADHAP40939 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HADHAP40939 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HADHAP40939 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
HADHAP40939 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HADHAP40939 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
HADHAP40939 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
HADHAP40939 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.95■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms