Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDCBPO00560 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.04■□□□□ 0.96
SDCBPO00560 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SDCBPO00560 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SDCBPO00560 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDCBPO00560 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SDCBPO00560 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SDCBPO00560 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.03■□□□□ 0.96
SDCBPO00560 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDCBPO00560 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.03■□□□□ 0.96
SDCBPO00560 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDCBPO00560 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDCBPO00560 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDCBPO00560 WHAMMP2-203ENST00000563942 1603 ntBASIC21.03■□□□□ 0.96
SDCBPO00560 AC018358.1-201ENST00000631079 1402 ntBASIC21.03■□□□□ 0.96
SDCBPO00560 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDCBPO00560 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.02■□□□□ 0.96
SDCBPO00560 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDCBPO00560 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.02■□□□□ 0.96
SDCBPO00560 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.02■□□□□ 0.96
SDCBPO00560 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SDCBPO00560 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDCBPO00560 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDCBPO00560 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SDCBPO00560 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
SDCBPO00560 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SDCBPO00560 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21■□□□□ 0.95
SDCBPO00560 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDCBPO00560 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.99■□□□□ 0.95
SDCBPO00560 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.99■□□□□ 0.95
SDCBPO00560 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDCBPO00560 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SDCBPO00560 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.99■□□□□ 0.95
SDCBPO00560 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SDCBPO00560 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SDCBPO00560 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SDCBPO00560 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.98■□□□□ 0.95
SDCBPO00560 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDCBPO00560 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.98■□□□□ 0.95
SDCBPO00560 AC145676.1-201ENST00000514988 2004 ntBASIC20.98■□□□□ 0.95
SDCBPO00560 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SDCBPO00560 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SDCBPO00560 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SDCBPO00560 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDCBPO00560 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SDCBPO00560 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDCBPO00560 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDCBPO00560 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.97■□□□□ 0.95
SDCBPO00560 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SDCBPO00560 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDCBPO00560 AC020928.2-201ENST00000588717 2197 ntBASIC20.97■□□□□ 0.95
SDCBPO00560 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SDCBPO00560 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SDCBPO00560 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SDCBPO00560 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.96■□□□□ 0.95
SDCBPO00560 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SDCBPO00560 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SDCBPO00560 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SDCBPO00560 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.96■□□□□ 0.95
SDCBPO00560 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.96■□□□□ 0.95
SDCBPO00560 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.96■□□□□ 0.95
SDCBPO00560 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.96■□□□□ 0.95
SDCBPO00560 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.96■□□□□ 0.95
SDCBPO00560 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.95■□□□□ 0.94
SDCBPO00560 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.95■□□□□ 0.94
SDCBPO00560 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SDCBPO00560 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDCBPO00560 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.94■□□□□ 0.94
SDCBPO00560 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDCBPO00560 RPS2P35-201ENST00000443417 897 ntBASIC20.94■□□□□ 0.94
SDCBPO00560 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SDCBPO00560 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.94■□□□□ 0.94
SDCBPO00560 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SDCBPO00560 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDCBPO00560 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDCBPO00560 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.93■□□□□ 0.94
SDCBPO00560 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDCBPO00560 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDCBPO00560 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDCBPO00560 DUX4L29-201ENST00000425409 679 ntBASIC20.92■□□□□ 0.94
SDCBPO00560 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDCBPO00560 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SDCBPO00560 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SDCBPO00560 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SDCBPO00560 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDCBPO00560 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.9■□□□□ 0.94
SDCBPO00560 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDCBPO00560 AC021231.2-201ENST00000594613 730 ntBASIC20.9■□□□□ 0.94
SDCBPO00560 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDCBPO00560 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
SDCBPO00560 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDCBPO00560 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SDCBPO00560 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
SDCBPO00560 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDCBPO00560 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDCBPO00560 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SDCBPO00560 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDCBPO00560 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.88■□□□□ 0.93
SDCBPO00560 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDCBPO00560 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms