Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SMCHD1A6NHR9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SMCHD1A6NHR9 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.9■■■□□ 2.22
SMCHD1A6NHR9 AC018358.1-201ENST00000631079 1402 ntBASIC28.9■■■□□ 2.22
SMCHD1A6NHR9 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SMCHD1A6NHR9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.89■■■□□ 2.22
SMCHD1A6NHR9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.22
SMCHD1A6NHR9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.89■■■□□ 2.21
SMCHD1A6NHR9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.21
SMCHD1A6NHR9 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SMCHD1A6NHR9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SMCHD1A6NHR9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SMCHD1A6NHR9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.87■■■□□ 2.21
SMCHD1A6NHR9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.87■■■□□ 2.21
SMCHD1A6NHR9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
SMCHD1A6NHR9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
SMCHD1A6NHR9 U85056.1-201ENST00000616429 682 ntBASIC28.87■■■□□ 2.21
SMCHD1A6NHR9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SMCHD1A6NHR9 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
SMCHD1A6NHR9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SMCHD1A6NHR9 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.86■■■□□ 2.21
SMCHD1A6NHR9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.86■■■□□ 2.21
SMCHD1A6NHR9 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC28.85■■■□□ 2.21
SMCHD1A6NHR9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
SMCHD1A6NHR9 DRD5P2-201ENST00000421395 2012 ntBASIC28.85■■■□□ 2.21
SMCHD1A6NHR9 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SMCHD1A6NHR9 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMCHD1A6NHR9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.83■■■□□ 2.21
SMCHD1A6NHR9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.83■■■□□ 2.21
SMCHD1A6NHR9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
SMCHD1A6NHR9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC28.82■■■□□ 2.2
SMCHD1A6NHR9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
SMCHD1A6NHR9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SMCHD1A6NHR9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SMCHD1A6NHR9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC28.81■■■□□ 2.2
SMCHD1A6NHR9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.81■■■□□ 2.2
SMCHD1A6NHR9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
SMCHD1A6NHR9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.8■■■□□ 2.2
SMCHD1A6NHR9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC28.79■■■□□ 2.2
SMCHD1A6NHR9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SMCHD1A6NHR9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
SMCHD1A6NHR9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
SMCHD1A6NHR9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SMCHD1A6NHR9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SMCHD1A6NHR9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SMCHD1A6NHR9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SMCHD1A6NHR9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
SMCHD1A6NHR9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
SMCHD1A6NHR9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SMCHD1A6NHR9 AC025884.2-201ENST00000553429 711 ntBASIC28.77■■■□□ 2.2
SMCHD1A6NHR9 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
SMCHD1A6NHR9 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
SMCHD1A6NHR9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.76■■■□□ 2.19
SMCHD1A6NHR9 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SMCHD1A6NHR9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.19
SMCHD1A6NHR9 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SMCHD1A6NHR9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.75■■■□□ 2.19
SMCHD1A6NHR9 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SMCHD1A6NHR9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
SMCHD1A6NHR9 TSPY13P-201ENST00000338964 914 ntBASIC28.75■■■□□ 2.19
SMCHD1A6NHR9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SMCHD1A6NHR9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SMCHD1A6NHR9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SMCHD1A6NHR9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.74■■■□□ 2.19
SMCHD1A6NHR9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.74■■■□□ 2.19
SMCHD1A6NHR9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.73■■■□□ 2.19
SMCHD1A6NHR9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SMCHD1A6NHR9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.73■■■□□ 2.19
SMCHD1A6NHR9 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.73■■■□□ 2.19
SMCHD1A6NHR9 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SMCHD1A6NHR9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
SMCHD1A6NHR9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SMCHD1A6NHR9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
SMCHD1A6NHR9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC28.7■■■□□ 2.19
SMCHD1A6NHR9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SMCHD1A6NHR9 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.7■■■□□ 2.19
SMCHD1A6NHR9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SMCHD1A6NHR9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.7■■■□□ 2.18
SMCHD1A6NHR9 AC004987.1-201ENST00000428627 508 ntBASIC28.69■■■□□ 2.18
SMCHD1A6NHR9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC28.69■■■□□ 2.18
SMCHD1A6NHR9 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
SMCHD1A6NHR9 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SMCHD1A6NHR9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SMCHD1A6NHR9 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.68■■■□□ 2.18
SMCHD1A6NHR9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 ECEL1P2-201ENST00000461596 1295 ntBASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
SMCHD1A6NHR9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMCHD1A6NHR9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC28.66■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms