Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PTCD3Q96EY7 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.89■■□□□ 1.58
PTCD3Q96EY7 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PTCD3Q96EY7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PTCD3Q96EY7 AC044849.2-201ENST00000606596 710 ntBASIC24.88■■□□□ 1.57
PTCD3Q96EY7 AC091060.1-201ENST00000623524 1766 ntBASIC24.88■■□□□ 1.57
PTCD3Q96EY7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCD3Q96EY7 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PTCD3Q96EY7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.85■■□□□ 1.57
PTCD3Q96EY7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.85■■□□□ 1.57
PTCD3Q96EY7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.84■■□□□ 1.57
PTCD3Q96EY7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.84■■□□□ 1.57
PTCD3Q96EY7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.84■■□□□ 1.57
PTCD3Q96EY7 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
PTCD3Q96EY7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
PTCD3Q96EY7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
PTCD3Q96EY7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PTCD3Q96EY7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
PTCD3Q96EY7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.83■■□□□ 1.56
PTCD3Q96EY7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
PTCD3Q96EY7 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
PTCD3Q96EY7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
PTCD3Q96EY7 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.82■■□□□ 1.56
PTCD3Q96EY7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
PTCD3Q96EY7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.81■■□□□ 1.56
PTCD3Q96EY7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
PTCD3Q96EY7 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCD3Q96EY7 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCD3Q96EY7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PTCD3Q96EY7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
PTCD3Q96EY7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PTCD3Q96EY7 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
PTCD3Q96EY7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PTCD3Q96EY7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.79■■□□□ 1.56
PTCD3Q96EY7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PTCD3Q96EY7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PTCD3Q96EY7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.79■■□□□ 1.56
PTCD3Q96EY7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PTCD3Q96EY7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
PTCD3Q96EY7 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.78■■□□□ 1.56
PTCD3Q96EY7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
PTCD3Q96EY7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PTCD3Q96EY7 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.78■■□□□ 1.56
PTCD3Q96EY7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.78■■□□□ 1.56
PTCD3Q96EY7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PTCD3Q96EY7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.77■■□□□ 1.56
PTCD3Q96EY7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PTCD3Q96EY7 AC020928.2-201ENST00000588717 2197 ntBASIC24.77■■□□□ 1.56
PTCD3Q96EY7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
PTCD3Q96EY7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
PTCD3Q96EY7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.76■■□□□ 1.55
PTCD3Q96EY7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.76■■□□□ 1.55
PTCD3Q96EY7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.76■■□□□ 1.55
PTCD3Q96EY7 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.76■■□□□ 1.55
PTCD3Q96EY7 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 LINC00273-201ENST00000539813 1452 ntBASIC24.75■■□□□ 1.55
PTCD3Q96EY7 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD3Q96EY7 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD3Q96EY7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD3Q96EY7 AC135983.2-203ENST00000454486 1613 ntBASIC24.74■■□□□ 1.55
PTCD3Q96EY7 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.73■■□□□ 1.55
PTCD3Q96EY7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.73■■□□□ 1.55
PTCD3Q96EY7 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.73■■□□□ 1.55
PTCD3Q96EY7 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
PTCD3Q96EY7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCD3Q96EY7 RPS2P35-201ENST00000443417 897 ntBASIC24.72■■□□□ 1.55
PTCD3Q96EY7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
PTCD3Q96EY7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
PTCD3Q96EY7 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCD3Q96EY7 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD3Q96EY7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD3Q96EY7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
PTCD3Q96EY7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD3Q96EY7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.71■■□□□ 1.55
PTCD3Q96EY7 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PTCD3Q96EY7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.55
PTCD3Q96EY7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD3Q96EY7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.7■■□□□ 1.54
PTCD3Q96EY7 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
PTCD3Q96EY7 AC100797.4-201ENST00000631653 1827 ntBASIC24.7■■□□□ 1.54
PTCD3Q96EY7 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD3Q96EY7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms