Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.33■■□□□ 1.81
PTPN9P43378 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTPN9P43378 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTPN9P43378 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTPN9P43378 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.32■■□□□ 1.8
PTPN9P43378 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTPN9P43378 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTPN9P43378 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.3■■□□□ 1.8
PTPN9P43378 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.3■■□□□ 1.8
PTPN9P43378 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PTPN9P43378 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTPN9P43378 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.29■■□□□ 1.8
PTPN9P43378 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.29■■□□□ 1.8
PTPN9P43378 CR559946.2-201ENST00000623684 991 ntBASIC26.29■■□□□ 1.8
PTPN9P43378 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTPN9P43378 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PTPN9P43378 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN9P43378 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
PTPN9P43378 MIR7108-201ENST00000614319 87 ntBASIC26.27■■□□□ 1.8
PTPN9P43378 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
PTPN9P43378 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
PTPN9P43378 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTPN9P43378 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTPN9P43378 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.26■■□□□ 1.79
PTPN9P43378 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
PTPN9P43378 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTPN9P43378 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PTPN9P43378 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
PTPN9P43378 MIR3648-2-201ENST00000581792 180 ntBASIC26.25■■□□□ 1.79
PTPN9P43378 MIR3648-1-201ENST00000615959 180 ntBASIC26.25■■□□□ 1.79
PTPN9P43378 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTPN9P43378 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTPN9P43378 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTPN9P43378 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
PTPN9P43378 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
PTPN9P43378 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTPN9P43378 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
PTPN9P43378 AC008813.1-201ENST00000536597 885 ntBASIC26.23■■□□□ 1.79
PTPN9P43378 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.23■■□□□ 1.79
PTPN9P43378 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTPN9P43378 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PTPN9P43378 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
PTPN9P43378 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PTPN9P43378 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
PTPN9P43378 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PTPN9P43378 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
PTPN9P43378 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.2■■□□□ 1.79
PTPN9P43378 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PTPN9P43378 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PTPN9P43378 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTPN9P43378 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
PTPN9P43378 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.19■■□□□ 1.78
PTPN9P43378 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTPN9P43378 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PTPN9P43378 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PTPN9P43378 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
PTPN9P43378 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PTPN9P43378 AC016575.1-201ENST00000607026 382 ntBASIC26.17■■□□□ 1.78
PTPN9P43378 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.17■■□□□ 1.78
PTPN9P43378 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.17■■□□□ 1.78
PTPN9P43378 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
PTPN9P43378 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PTPN9P43378 AC148477.6-201ENST00000623746 465 ntBASIC26.15■■□□□ 1.78
PTPN9P43378 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
PTPN9P43378 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
PTPN9P43378 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
PTPN9P43378 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
PTPN9P43378 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PTPN9P43378 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.14■■□□□ 1.78
PTPN9P43378 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
PTPN9P43378 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PTPN9P43378 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PTPN9P43378 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.14■■□□□ 1.77
PTPN9P43378 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.13■■□□□ 1.77
PTPN9P43378 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
PTPN9P43378 HLA-V-202ENST00000446817 847 ntBASIC26.13■■□□□ 1.77
PTPN9P43378 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PTPN9P43378 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.12■■□□□ 1.77
PTPN9P43378 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
PTPN9P43378 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.12■■□□□ 1.77
PTPN9P43378 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
PTPN9P43378 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PTPN9P43378 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTPN9P43378 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTPN9P43378 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PTPN9P43378 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
PTPN9P43378 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.09■■□□□ 1.77
PTPN9P43378 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.09■■□□□ 1.77
PTPN9P43378 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PTPN9P43378 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.09■■□□□ 1.77
PTPN9P43378 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
PTPN9P43378 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
PTPN9P43378 MIR219A2-201ENST00000608502 1504 ntBASIC26.09■■□□□ 1.77
PTPN9P43378 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
PTPN9P43378 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
PTPN9P43378 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.08■■□□□ 1.77
PTPN9P43378 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTPN9P43378 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTPN9P43378 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTPN9P43378 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms