Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SDCBPO00560 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SDCBPO00560 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.25■□□□□ 0.99
SDCBPO00560 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SDCBPO00560 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SDCBPO00560 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SDCBPO00560 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDCBPO00560 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDCBPO00560 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDCBPO00560 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SDCBPO00560 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SDCBPO00560 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDCBPO00560 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDCBPO00560 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDCBPO00560 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SDCBPO00560 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SDCBPO00560 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDCBPO00560 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDCBPO00560 MIR6090-201ENST00000622481 60 ntBASIC21.21■□□□□ 0.99
SDCBPO00560 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
SDCBPO00560 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDCBPO00560 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDCBPO00560 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDCBPO00560 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDCBPO00560 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDCBPO00560 AP002414.2-202ENST00000590929 1450 ntBASIC21.2■□□□□ 0.98
SDCBPO00560 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SDCBPO00560 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SDCBPO00560 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SDCBPO00560 AL162393.1-201ENST00000437852 946 ntBASIC21.18■□□□□ 0.98
SDCBPO00560 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDCBPO00560 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.17■□□□□ 0.98
SDCBPO00560 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.17■□□□□ 0.98
SDCBPO00560 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDCBPO00560 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.17■□□□□ 0.98
SDCBPO00560 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDCBPO00560 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SDCBPO00560 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDCBPO00560 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDCBPO00560 AC087741.3-201ENST00000624270 1347 ntBASIC21.16■□□□□ 0.98
SDCBPO00560 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDCBPO00560 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.15■□□□□ 0.98
SDCBPO00560 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SDCBPO00560 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SDCBPO00560 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SDCBPO00560 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SDCBPO00560 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.14■□□□□ 0.97
SDCBPO00560 AC091060.1-201ENST00000623524 1766 ntBASIC21.14■□□□□ 0.97
SDCBPO00560 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.14■□□□□ 0.97
SDCBPO00560 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.14■□□□□ 0.97
SDCBPO00560 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SDCBPO00560 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SDCBPO00560 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.13■□□□□ 0.97
SDCBPO00560 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.13■□□□□ 0.97
SDCBPO00560 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.13■□□□□ 0.97
SDCBPO00560 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.13■□□□□ 0.97
SDCBPO00560 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDCBPO00560 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.12■□□□□ 0.97
SDCBPO00560 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SDCBPO00560 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SDCBPO00560 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDCBPO00560 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.12■□□□□ 0.97
SDCBPO00560 AC044849.2-201ENST00000606596 710 ntBASIC21.12■□□□□ 0.97
SDCBPO00560 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDCBPO00560 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SDCBPO00560 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDCBPO00560 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDCBPO00560 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.11■□□□□ 0.97
SDCBPO00560 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SDCBPO00560 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SDCBPO00560 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SDCBPO00560 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SDCBPO00560 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SDCBPO00560 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SDCBPO00560 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SDCBPO00560 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SDCBPO00560 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SDCBPO00560 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.09■□□□□ 0.97
SDCBPO00560 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SDCBPO00560 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SDCBPO00560 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
SDCBPO00560 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SDCBPO00560 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDCBPO00560 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
SDCBPO00560 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SDCBPO00560 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SDCBPO00560 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.07■□□□□ 0.96
SDCBPO00560 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SDCBPO00560 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SDCBPO00560 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.07■□□□□ 0.96
SDCBPO00560 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SDCBPO00560 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SDCBPO00560 AC135983.2-203ENST00000454486 1613 ntBASIC21.06■□□□□ 0.96
SDCBPO00560 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDCBPO00560 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SDCBPO00560 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDCBPO00560 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.05■□□□□ 0.96
SDCBPO00560 LINC00273-201ENST00000539813 1452 ntBASIC21.05■□□□□ 0.96
SDCBPO00560 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDCBPO00560 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms