RNA–Protein interactions for RNA: YPL085W

SEC16, Transcript of COPII vesicle coat protein required for ER transport vesicle budding, yeastyeast

Gene SEC16, Length 6,588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC16YPL085W INO80P53115 1489 aa3.82□□□□□ -1.8
SEC16YPL085W SCT1P32784 759 aa3.57□□□□□ -1.84
SEC16YPL085W TCB3Q03640 1545 aaKnown RBP3.57□□□□□ -1.84
SEC16YPL085W SPA2P23201 1466 aaKnown RBP3.54□□□□□ -1.84
SEC16YPL085W SGS1P35187 1447 aa3.54□□□□□ -1.84
SEC16YPL085W TAF7Q05021 590 aa3.52□□□□□ -1.85
SEC16YPL085W SPT6P23615 1451 aaKnown RBP3.5□□□□□ -1.85
SEC16YPL085W DRS1P32892 752 aaKnown RBP3.46□□□□□ -1.86
SEC16YPL085W BFR2Q06631 534 aaKnown RBP3.42□□□□□ -1.86
SEC16YPL085W RSE1Q04693 1361 aaKnown RBP3.37□□□□□ -1.87
SEC16YPL085W SSN2P38931 1420 aa3.36□□□□□ -1.87
SEC16YPL085W SKI3P17883 1432 aaKnown RBP3.36□□□□□ -1.87
SEC16YPL085W YTA7P40340 1379 aa3.35□□□□□ -1.87
SEC16YPL085W SIN3P22579 1536 aa3.35□□□□□ -1.87
SEC16YPL085W SMC4Q12267 1418 aa3.29□□□□□ -1.88
SEC16YPL085W CHD1P32657 1468 aa3.29□□□□□ -1.88
SEC16YPL085W YFR016CP43597 1233 aaKnown RBP3.27□□□□□ -1.89
SEC16YPL085W TAF2P23255 1407 aa3.26□□□□□ -1.89
SEC16YPL085W BUD4P47136 1447 aa3.25□□□□□ -1.89
SEC16YPL085W STH1P32597 1359 aa3.24□□□□□ -1.89
SEC16YPL085W TOP2P06786 1428 aaKnown RBP3.23□□□□□ -1.89
SEC16YPL085W MYO4P32492 1471 aa3.23□□□□□ -1.89
SEC16YPL085W URN1Q06525 465 aaKnown RBP3.22□□□□□ -1.89
SEC16YPL085W XRN1P22147 1528 aaKnown RBP3.21□□□□□ -1.9
SEC16YPL085W KOG1P38873 1557 aa3.2□□□□□ -1.9
SEC16YPL085W THO2P53552 1597 aaKnown RBP3.2□□□□□ -1.9
SEC16YPL085W STU1P38198 1513 aa3.19□□□□□ -1.9
SEC16YPL085W CFT1Q06632 1357 aaKnown RBP3.19□□□□□ -1.9
SEC16YPL085W MON2P48563 1636 aaPredicted RBP3.18□□□□□ -1.9
SEC16YPL085W SWR1Q05471 1514 aa3.18□□□□□ -1.9
SEC16YPL085W YPK9Q12697 1472 aa3.18□□□□□ -1.9
SEC16YPL085W HSL1P34244 1518 aa3.17□□□□□ -1.9
SEC16YPL085W MMS1Q06211 1407 aa3.17□□□□□ -1.9
SEC16YPL085W NAP1P25293 417 aaKnown RBP3.15□□□□□ -1.9
SEC16YPL085W IOC4Q04213 475 aa3.14□□□□□ -1.91
SEC16YPL085W SPP41P38904 1435 aa3.13□□□□□ -1.91
SEC16YPL085W MYO2P19524 1574 aaKnown RBP3.13□□□□□ -1.91
SEC16YPL085W POL1P13382 1468 aa3.13□□□□□ -1.91
SEC16YPL085W SEC3P33332 1336 aaKnown RBP3.12□□□□□ -1.91
SEC16YPL085W ECM5Q03214 1411 aa3.12□□□□□ -1.91
SEC16YPL085W RPO31P04051 1460 aa3.11□□□□□ -1.91
SEC16YPL085W CAT8P39113 1433 aa3.11□□□□□ -1.91
SEC16YPL085W TRM3Q07527 1436 aa3.11□□□□□ -1.91
SEC16YPL085W SSK2P53599 1579 aa3.1□□□□□ -1.91
SEC16YPL085W IQG1Q12280 1495 aa3.1□□□□□ -1.91
SEC16YPL085W PAF1P38351 445 aa3.09□□□□□ -1.91
SEC16YPL085W DNA2P38859 1522 aa3.09□□□□□ -1.91
SEC16YPL085W TY1B-DR4Q07793 1604 aa3.09□□□□□ -1.91
SEC16YPL085W MET5P47169 1442 aa3.09□□□□□ -1.91
SEC16YPL085W REV3P14284 1504 aa3.09□□□□□ -1.92
SEC16YPL085W GEA2P39993 1459 aaKnown RBP3.08□□□□□ -1.92
SEC16YPL085W SCC2Q04002 1493 aa3.08□□□□□ -1.92
SEC16YPL085W TFA1P36100 482 aa3.08□□□□□ -1.92
SEC16YPL085W HAP1P0CE41 1502 aa3.06□□□□□ -1.92
SEC16YPL085W IKI3Q06706 1349 aaKnown RBP3.06□□□□□ -1.92
SEC16YPL085W YRB30P53107 440 aaPredicted RBP3.06□□□□□ -1.92
SEC16YPL085W GEA1P47102 1408 aaPredicted RBP3.06□□□□□ -1.92
SEC16YPL085W MTC1P47018 478 aaKnown RBP3.06□□□□□ -1.92
SEC16YPL085W EDE1P34216 1381 aa3.06□□□□□ -1.92
SEC16YPL085W MMS22Q06164 1454 aa3.06□□□□□ -1.92
SEC16YPL085W YOR1P53049 1477 aa3.04□□□□□ -1.92
SEC16YPL085W LTE1P07866 1435 aa3.04□□□□□ -1.92
SEC16YPL085W TSC11P40061 1430 aa3.04□□□□□ -1.92
SEC16YPL085W SNT2P53127 1403 aa3.04□□□□□ -1.92
SEC16YPL085W TRM732Q03496 1420 aa3.03□□□□□ -1.92
SEC16YPL085W MDS3P53094 1487 aa3.03□□□□□ -1.92
SEC16YPL085W HIR3P47171 1648 aa3.03□□□□□ -1.92
SEC16YPL085W SRB8P25648 1427 aa3.03□□□□□ -1.92
SEC16YPL085W MET10P39692 1035 aa3.02□□□□□ -1.93
SEC16YPL085W NOP7P53261 605 aaKnown RBP3.02□□□□□ -1.93
SEC16YPL085W BUD3P25558 1636 aa3.01□□□□□ -1.93
SEC16YPL085W PAN1P32521 1480 aa3□□□□□ -1.93
SEC16YPL085W PEP1P32319 1579 aa2.99□□□□□ -1.93
SEC16YPL085W RQC2Q12532 1038 aaKnown RBP2.99□□□□□ -1.93
SEC16YPL085W RTT106P40161 455 aa2.99□□□□□ -1.93
SEC16YPL085W RPS9BP05755 195 aaKnown RBP2.98□□□□□ -1.93
SEC16YPL085W PDR10P51533 1564 aa2.98□□□□□ -1.93
SEC16YPL085W NUP159P40477 1460 aa2.97□□□□□ -1.93
SEC16YPL085W YRF1-4O13559 1382 aa2.97□□□□□ -1.93
SEC16YPL085W YML133CQ03099 1374 aa2.97□□□□□ -1.93
SEC16YPL085W YLL067CQ07888 1374 aa2.97□□□□□ -1.93
SEC16YPL085W YLL066CQ99208 1374 aa2.97□□□□□ -1.93
SEC16YPL085W ORC1P54784 914 aaPredicted RBP2.97□□□□□ -1.93
SEC16YPL085W PDR12Q02785 1511 aa2.96□□□□□ -1.94
SEC16YPL085W VPS15P22219 1454 aa2.96□□□□□ -1.94
SEC16YPL085W ECM16Q04217 1267 aaKnown RBP2.96□□□□□ -1.94
SEC16YPL085W UFD4P33202 1483 aa2.95□□□□□ -1.94
SEC16YPL085W RPP0P05317 312 aaKnown RBP2.95□□□□□ -1.94
SEC16YPL085W ESL2P36168 1195 aa2.95□□□□□ -1.94
SEC16YPL085W CDC25P04821 1589 aa2.95□□□□□ -1.94
SEC16YPL085W YCF1P39109 1515 aaKnown RBP2.94□□□□□ -1.94
SEC16YPL085W DAL5P15365 543 aa2.94□□□□□ -1.94
SEC16YPL085W DRS2P39524 1355 aa2.94□□□□□ -1.94
SEC16YPL085W KRI1P42846 591 aaKnown RBP2.93□□□□□ -1.94
SEC16YPL085W YMR196WQ04336 1088 aa2.93□□□□□ -1.94
SEC16YPL085W BUD21Q08492 214 aaPredicted RBP2.93□□□□□ -1.94
SEC16YPL085W NUP170P38181 1502 aa2.93□□□□□ -1.94
SEC16YPL085W YPR148CQ06523 435 aa2.93□□□□□ -1.94
SEC16YPL085W SNQ2P32568 1501 aaKnown RBP2.92□□□□□ -1.94
SEC16YPL085W POL5P39985 1022 aaKnown RBP2.92□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 50.3 ms