RNA–Protein interactions for RNA: YOR138C

RUP1, Transcript of Protein that regulates ubiquitination of Rsp5p, yeastyeast

Gene RUP1, Length 2,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUP1YOR138C SGS1P35187 1447 aa12.48□□□□□ -0.41
RUP1YOR138C SPA2P23201 1466 aaKnown RBP12.15□□□□□ -0.46
RUP1YOR138C SSN2P38931 1420 aa12.08□□□□□ -0.48
RUP1YOR138C INO80P53115 1489 aa12.06□□□□□ -0.48
RUP1YOR138C TCB3Q03640 1545 aaKnown RBP11.8□□□□□ -0.52
RUP1YOR138C DRS1P32892 752 aaKnown RBP11.79□□□□□ -0.52
RUP1YOR138C MON2P48563 1636 aaPredicted RBP11.6□□□□□ -0.55
RUP1YOR138C TY1B-DR4Q07793 1604 aa11.6□□□□□ -0.55
RUP1YOR138C HSL1P34244 1518 aa11.52□□□□□ -0.57
RUP1YOR138C SPT6P23615 1451 aaKnown RBP11.49□□□□□ -0.57
RUP1YOR138C XRN1P22147 1528 aaKnown RBP11.35□□□□□ -0.59
RUP1YOR138C HIR3P47171 1648 aa11.34□□□□□ -0.59
RUP1YOR138C SWR1Q05471 1514 aa11.24□□□□□ -0.61
RUP1YOR138C REV3P14284 1504 aa11.19□□□□□ -0.62
RUP1YOR138C TAF2P23255 1407 aa11.15□□□□□ -0.62
RUP1YOR138C SKI3P17883 1432 aaKnown RBP11.13□□□□□ -0.63
RUP1YOR138C THO2P53552 1597 aaKnown RBP11.12□□□□□ -0.63
RUP1YOR138C SIN3P22579 1536 aa11.07□□□□□ -0.64
RUP1YOR138C SSK2P53599 1579 aa11.06□□□□□ -0.64
RUP1YOR138C MMS22Q06164 1454 aa11.02□□□□□ -0.65
RUP1YOR138C DNA2P38859 1522 aa10.99□□□□□ -0.65
RUP1YOR138C CHD1P32657 1468 aa10.96□□□□□ -0.65
RUP1YOR138C MYO2P19524 1574 aaKnown RBP10.95□□□□□ -0.66
RUP1YOR138C ESP1Q03018 1630 aa10.95□□□□□ -0.66
RUP1YOR138C MTC1P47018 478 aaKnown RBP10.9□□□□□ -0.66
RUP1YOR138C SAS10Q12136 610 aaPredicted RBP10.87□□□□□ -0.67
RUP1YOR138C STU1P38198 1513 aa10.87□□□□□ -0.67
RUP1YOR138C POL1P13382 1468 aa10.84□□□□□ -0.67
RUP1YOR138C RSE1Q04693 1361 aaKnown RBP10.82□□□□□ -0.68
RUP1YOR138C BUD4P47136 1447 aa10.82□□□□□ -0.68
RUP1YOR138C KOG1P38873 1557 aa10.81□□□□□ -0.68
RUP1YOR138C YTA7P40340 1379 aa10.8□□□□□ -0.68
RUP1YOR138C BPT1P14772 1559 aa10.78□□□□□ -0.68
RUP1YOR138C ATG2P53855 1592 aa10.78□□□□□ -0.68
RUP1YOR138C ECM5Q03214 1411 aa10.76□□□□□ -0.69
RUP1YOR138C YPK9Q12697 1472 aa10.75□□□□□ -0.69
RUP1YOR138C RKR1Q04781 1562 aa10.7□□□□□ -0.7
RUP1YOR138C YOR1P53049 1477 aa10.66□□□□□ -0.7
RUP1YOR138C TRM732Q03496 1420 aa10.65□□□□□ -0.7
RUP1YOR138C UFD4P33202 1483 aa10.65□□□□□ -0.7
RUP1YOR138C SCC2Q04002 1493 aa10.65□□□□□ -0.7
RUP1YOR138C MYO4P32492 1471 aa10.61□□□□□ -0.71
RUP1YOR138C MDS3P53094 1487 aa10.6□□□□□ -0.71
RUP1YOR138C PEP1P32319 1579 aa10.59□□□□□ -0.71
RUP1YOR138C IKI3Q06706 1349 aaKnown RBP10.58□□□□□ -0.72
RUP1YOR138C RPO31P04051 1460 aa10.57□□□□□ -0.72
RUP1YOR138C TOP2P06786 1428 aaKnown RBP10.56□□□□□ -0.72
RUP1YOR138C TAF7Q05021 590 aa10.55□□□□□ -0.72
RUP1YOR138C STH1P32597 1359 aa10.55□□□□□ -0.72
RUP1YOR138C SMC4Q12267 1418 aa10.55□□□□□ -0.72
RUP1YOR138C SNQ2P32568 1501 aaKnown RBP10.52□□□□□ -0.72
RUP1YOR138C IFH1P39520 1085 aa10.51□□□□□ -0.73
RUP1YOR138C YCF1P39109 1515 aaKnown RBP10.5□□□□□ -0.73
RUP1YOR138C SSM4P40318 1319 aa10.46□□□□□ -0.73
RUP1YOR138C MLP2P40457 1679 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-LR1P0C2J3 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-FP0CX63 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-GR2P0CX64 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-CP25384 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-DR2Q03494 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY1B-DR1Q03855 1755 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-DR3Q07791 1770 aaKnown RBP10.44□□□□□ -0.74
RUP1YOR138C TY2B-OR1Q12113 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-DR1Q12472 1770 aa10.44□□□□□ -0.74
RUP1YOR138C TY2B-OR2Q12501 1770 aa10.44□□□□□ -0.74
RUP1YOR138C RQC2Q12532 1038 aaKnown RBP10.43□□□□□ -0.74
RUP1YOR138C TY1B-DR3Q99231 1755 aa10.42□□□□□ -0.74
RUP1YOR138C PDR15Q04182 1529 aaKnown RBP10.42□□□□□ -0.74
RUP1YOR138C SPP41P38904 1435 aa10.42□□□□□ -0.74
RUP1YOR138C NSR1P27476 414 aaKnown RBP RIP-Chip data10.4□□□□□ -0.75not detected
RUP1YOR138C GEA1P47102 1408 aaPredicted RBP10.39□□□□□ -0.75
RUP1YOR138C NUP170P38181 1502 aa10.37□□□□□ -0.75
RUP1YOR138C TY2B-BQ12491 1770 aa10.37□□□□□ -0.75
RUP1YOR138C PAN1P32521 1480 aa10.35□□□□□ -0.75
RUP1YOR138C TSC11P40061 1430 aa10.32□□□□□ -0.76
RUP1YOR138C ULS1Q08562 1619 aa10.32□□□□□ -0.76
RUP1YOR138C NOP2P40991 618 aaKnown RBP10.31□□□□□ -0.76
RUP1YOR138C RTT106P40161 455 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-HO13535 1793 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-DR5P0C2I2 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-DR6P0C2I3 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-LR2P0C2I5 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-LR3P0C2I6 1755 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C TY1B-PR1P0C2I9 1755 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C TY1B-PR2P0C2J0 1756 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-PR3P0C2J1 1755 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C TY1B-JR1P47098 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-ML2Q03434 1755 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C TY1B-ER1Q03612 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-ML1Q04711 1755 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C TY1B-GR2Q12269 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-OLQ12273 1755 aa10.26□□□□□ -0.77
RUP1YOR138C TY1B-PLQ12414 1755 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C POL5P39985 1022 aaKnown RBP10.26□□□□□ -0.77
RUP1YOR138C VTH1P40438 1549 aa10.25□□□□□ -0.77
RUP1YOR138C VTH2P40890 1549 aa10.25□□□□□ -0.77
RUP1YOR138C TY1B-BRQ12193 1756 aa10.23□□□□□ -0.77
RUP1YOR138C TY1B-GR3Q12316 1755 aa10.23□□□□□ -0.77
RUP1YOR138C TY1B-ORQ92393 1755 aa10.23□□□□□ -0.77
RUP1YOR138C TY3B-GQ99315 1547 aa10.22□□□□□ -0.77
Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms