RNA–Protein interactions for RNA: YOR018W

ROD1, Transcript of Alpha-arrestin involved in ubiquitin-dependent endocytosis, yeastyeast

Gene ROD1, Length 2,514 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROD1YOR018W DRS1P32892 752 aaKnown RBP7.9□□□□□ -1.15
ROD1YOR018W MTC1P47018 478 aaKnown RBP7.63□□□□□ -1.19
ROD1YOR018W SGS1P35187 1447 aa7.13□□□□□ -1.27
ROD1YOR018W INO80P53115 1489 aa7.03□□□□□ -1.28
ROD1YOR018W MON2P48563 1636 aaPredicted RBP7□□□□□ -1.29
ROD1YOR018W BFR2Q06631 534 aaKnown RBP6.92□□□□□ -1.3
ROD1YOR018W TCB3Q03640 1545 aaKnown RBP6.9□□□□□ -1.31
ROD1YOR018W TY1B-DR4Q07793 1604 aa6.88□□□□□ -1.31
ROD1YOR018W SWR1Q05471 1514 aa6.83□□□□□ -1.32
ROD1YOR018W TFA1P36100 482 aa6.8□□□□□ -1.32
ROD1YOR018W HSL1P34244 1518 aa6.76□□□□□ -1.33
ROD1YOR018W AVT3P36062 692 aa6.74□□□□□ -1.33
ROD1YOR018W FAP1P53971 965 aa6.74□□□□□ -1.33
ROD1YOR018W DNA2P38859 1522 aa6.74□□□□□ -1.33
ROD1YOR018W SSN2P38931 1420 aa6.74□□□□□ -1.33
ROD1YOR018W SPT6P23615 1451 aaKnown RBP6.73□□□□□ -1.33
ROD1YOR018W SPA2P23201 1466 aaKnown RBP6.67□□□□□ -1.34
ROD1YOR018W DIP2Q12220 943 aaPredicted RBP6.66□□□□□ -1.34
ROD1YOR018W HIR3P47171 1648 aa6.63□□□□□ -1.35
ROD1YOR018W XRN1P22147 1528 aaKnown RBP6.59□□□□□ -1.35
ROD1YOR018W KOG1P38873 1557 aa6.57□□□□□ -1.36
ROD1YOR018W ECM5Q03214 1411 aa6.5□□□□□ -1.37
ROD1YOR018W TAF2P23255 1407 aa6.49□□□□□ -1.37
ROD1YOR018W REV3P14284 1504 aa6.45□□□□□ -1.38
ROD1YOR018W BUD4P47136 1447 aa6.42□□□□□ -1.38
ROD1YOR018W THO2P53552 1597 aaKnown RBP6.36□□□□□ -1.39
ROD1YOR018W ATG2P53855 1592 aa6.35□□□□□ -1.39
ROD1YOR018W MDS3P53094 1487 aa6.35□□□□□ -1.39
ROD1YOR018W SKI3P17883 1432 aaKnown RBP6.34□□□□□ -1.39
ROD1YOR018W PEP1P32319 1579 aa6.33□□□□□ -1.4
ROD1YOR018W SSK2P53599 1579 aa6.33□□□□□ -1.4
ROD1YOR018W SIN3P22579 1536 aa6.32□□□□□ -1.4
ROD1YOR018W PRY3P47033 881 aa6.32□□□□□ -1.4
ROD1YOR018W RSE1Q04693 1361 aaKnown RBP6.29□□□□□ -1.4
ROD1YOR018W ESP1Q03018 1630 aa6.27□□□□□ -1.41
ROD1YOR018W UFD4P33202 1483 aa6.18□□□□□ -1.42
ROD1YOR018W SCC2Q04002 1493 aa6.18□□□□□ -1.42
ROD1YOR018W YPK9Q12697 1472 aa6.18□□□□□ -1.42
ROD1YOR018W MYO2P19524 1574 aaKnown RBP6.16□□□□□ -1.42
ROD1YOR018W STU1P38198 1513 aa6.14□□□□□ -1.43
ROD1YOR018W RPO31P04051 1460 aa6.12□□□□□ -1.43
ROD1YOR018W BPT1P14772 1559 aa6.12□□□□□ -1.43
ROD1YOR018W POL1P13382 1468 aa6.12□□□□□ -1.43
ROD1YOR018W RQC2Q12532 1038 aaKnown RBP6.1□□□□□ -1.43
ROD1YOR018W YCF1P39109 1515 aaKnown RBP6.09□□□□□ -1.43
ROD1YOR018W TY2B-LR1P0C2J3 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-FP0CX63 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-GR2P0CX64 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-CP25384 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-DR2Q03494 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY1B-DR1Q03855 1755 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-DR3Q07791 1770 aaKnown RBP6.08□□□□□ -1.44
ROD1YOR018W TY2B-OR1Q12113 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-DR1Q12472 1770 aa6.08□□□□□ -1.44
ROD1YOR018W TY2B-OR2Q12501 1770 aa6.08□□□□□ -1.44
ROD1YOR018W RKR1Q04781 1562 aa6.08□□□□□ -1.44
ROD1YOR018W TOP2P06786 1428 aaKnown RBP6.06□□□□□ -1.44
ROD1YOR018W ISW2Q08773 1120 aa6.04□□□□□ -1.44
ROD1YOR018W YOR1P53049 1477 aa6.04□□□□□ -1.44
ROD1YOR018W TY1B-DR3Q99231 1755 aa6.03□□□□□ -1.44
ROD1YOR018W RPG1P38249 964 aaKnown RBP6.02□□□□□ -1.45
ROD1YOR018W CHD1P32657 1468 aa6.01□□□□□ -1.45
ROD1YOR018W SAS10Q12136 610 aaPredicted RBP6.01□□□□□ -1.45
ROD1YOR018W TY2B-BQ12491 1770 aa6.01□□□□□ -1.45
ROD1YOR018W DNF1P32660 1571 aa6□□□□□ -1.45
ROD1YOR018W PRI1P10363 409 aa6□□□□□ -1.45
ROD1YOR018W TY1B-BRQ12193 1756 aa6□□□□□ -1.45
ROD1YOR018W TY1B-GR3Q12316 1755 aa6□□□□□ -1.45
ROD1YOR018W TY1B-ORQ92393 1755 aa6□□□□□ -1.45
ROD1YOR018W CDC25P04821 1589 aa5.98□□□□□ -1.45
ROD1YOR018W AAD16Q02895 342 aa5.98□□□□□ -1.45
ROD1YOR018W SMC4Q12267 1418 aa5.98□□□□□ -1.45
ROD1YOR018W TY1B-HO13535 1793 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-DR5P0C2I2 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-DR6P0C2I3 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-LR2P0C2I5 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-LR3P0C2I6 1755 aaKnown RBP5.97□□□□□ -1.45
ROD1YOR018W TY1B-PR1P0C2I9 1755 aaKnown RBP5.97□□□□□ -1.45
ROD1YOR018W TY1B-PR2P0C2J0 1756 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-PR3P0C2J1 1755 aaKnown RBP5.97□□□□□ -1.45
ROD1YOR018W TY1B-JR1P47098 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-ML2Q03434 1755 aaKnown RBP5.97□□□□□ -1.45
ROD1YOR018W TY1B-ER1Q03612 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-ML1Q04711 1755 aaKnown RBP5.97□□□□□ -1.45
ROD1YOR018W TY1B-GR2Q12269 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-OLQ12273 1755 aa5.97□□□□□ -1.45
ROD1YOR018W TY1B-PLQ12414 1755 aaKnown RBP5.97□□□□□ -1.45
ROD1YOR018W MMS22Q06164 1454 aa5.96□□□□□ -1.46
ROD1YOR018W YTA7P40340 1379 aa5.96□□□□□ -1.46
ROD1YOR018W PAN1P32521 1480 aa5.95□□□□□ -1.46
ROD1YOR018W SPP41P38904 1435 aa5.95□□□□□ -1.46
ROD1YOR018W ESC1Q03661 1658 aaKnown RBP5.94□□□□□ -1.46
ROD1YOR018W TSC11P40061 1430 aa5.91□□□□□ -1.46
ROD1YOR018W RPL17AP05740 184 aaKnown RBP5.91□□□□□ -1.46
ROD1YOR018W RPL17BP46990 184 aaKnown RBP5.91□□□□□ -1.46
ROD1YOR018W MYO4P32492 1471 aa5.9□□□□□ -1.46
ROD1YOR018W STH1P32597 1359 aa5.9□□□□□ -1.46
ROD1YOR018W SNQ2P32568 1501 aaKnown RBP5.89□□□□□ -1.47
ROD1YOR018W VTH1P40438 1549 aa5.89□□□□□ -1.47
ROD1YOR018W VTH2P40890 1549 aa5.89□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 45.4 ms