RNA–Protein interactions for RNA: YLR006C

SSK1, Transcript of Cytoplasmic phosphorelay intermediate osmosensor and regulator, yeastyeast

Gene SSK1, Length 2,139 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSK1YLR006C RQC2Q12532 1038 aaKnown RBP10.1□□□□□ -0.79
SSK1YLR006C DRS1P32892 752 aaKnown RBP10.04□□□□□ -0.8
SSK1YLR006C TFA1P36100 482 aa9.85□□□□□ -0.83
SSK1YLR006C TAF7Q05021 590 aa9.7□□□□□ -0.86
SSK1YLR006C SGS1P35187 1447 aa9.37□□□□□ -0.91
SSK1YLR006C BFR2Q06631 534 aaKnown RBP9.28□□□□□ -0.92
SSK1YLR006C SPA2P23201 1466 aaKnown RBP9.17□□□□□ -0.94
SSK1YLR006C INO80P53115 1489 aa9.1□□□□□ -0.95
SSK1YLR006C SSN2P38931 1420 aa9.09□□□□□ -0.95
SSK1YLR006C TCB3Q03640 1545 aaKnown RBP8.91□□□□□ -0.98
SSK1YLR006C TY1B-DR4Q07793 1604 aa8.82□□□□□ -1
SSK1YLR006C HSL1P34244 1518 aa8.72□□□□□ -1.01
SSK1YLR006C SPT6P23615 1451 aaKnown RBP8.68□□□□□ -1.02
SSK1YLR006C DMA1P38823 416 aa8.66□□□□□ -1.02
SSK1YLR006C LEO1P38439 464 aa8.65□□□□□ -1.03
SSK1YLR006C URN1Q06525 465 aaKnown RBP8.62□□□□□ -1.03
SSK1YLR006C MTC1P47018 478 aaKnown RBP8.62□□□□□ -1.03
SSK1YLR006C HIR3P47171 1648 aa8.58□□□□□ -1.04
SSK1YLR006C XRN1P22147 1528 aaKnown RBP8.57□□□□□ -1.04
SSK1YLR006C MON2P48563 1636 aaPredicted RBP8.54□□□□□ -1.04
SSK1YLR006C SWR1Q05471 1514 aa8.5□□□□□ -1.05
SSK1YLR006C AVT3P36062 692 aa8.5□□□□□ -1.05
SSK1YLR006C REV3P14284 1504 aa8.47□□□□□ -1.05
SSK1YLR006C THO2P53552 1597 aaKnown RBP8.46□□□□□ -1.05
SSK1YLR006C SIN3P22579 1536 aa8.39□□□□□ -1.07
SSK1YLR006C TAF2P23255 1407 aa8.39□□□□□ -1.07
SSK1YLR006C SSK2P53599 1579 aa8.39□□□□□ -1.07
SSK1YLR006C SKI3P17883 1432 aaKnown RBP8.39□□□□□ -1.07
SSK1YLR006C IOC4Q04213 475 aa8.38□□□□□ -1.07
SSK1YLR006C NAP1P25293 417 aaKnown RBP8.33□□□□□ -1.08
SSK1YLR006C ESP1Q03018 1630 aa8.33□□□□□ -1.08
SSK1YLR006C MYO2P19524 1574 aaKnown RBP8.33□□□□□ -1.08
SSK1YLR006C MMS22Q06164 1454 aa8.31□□□□□ -1.08
SSK1YLR006C CHD1P32657 1468 aa8.26□□□□□ -1.09
SSK1YLR006C IFH1P39520 1085 aa8.25□□□□□ -1.09
SSK1YLR006C STU1P38198 1513 aa8.2□□□□□ -1.1
SSK1YLR006C ATG2P53855 1592 aa8.18□□□□□ -1.1
SSK1YLR006C POL1P13382 1468 aa8.18□□□□□ -1.1
SSK1YLR006C BUD4P47136 1447 aa8.16□□□□□ -1.1
SSK1YLR006C KOG1P38873 1557 aa8.16□□□□□ -1.1
SSK1YLR006C BPT1P14772 1559 aa8.15□□□□□ -1.1
SSK1YLR006C DNA2P38859 1522 aa8.14□□□□□ -1.11
SSK1YLR006C ABP1P15891 592 aaKnown RBP8.14□□□□□ -1.11
SSK1YLR006C SAS10Q12136 610 aaPredicted RBP8.14□□□□□ -1.11
SSK1YLR006C ORC1P54784 914 aaPredicted RBP8.12□□□□□ -1.11
SSK1YLR006C YPK9Q12697 1472 aa8.12□□□□□ -1.11
SSK1YLR006C RKR1Q04781 1562 aa8.11□□□□□ -1.11
SSK1YLR006C RSE1Q04693 1361 aaKnown RBP8.11□□□□□ -1.11
SSK1YLR006C YTA7P40340 1379 aa8.1□□□□□ -1.11
SSK1YLR006C DIP2Q12220 943 aaPredicted RBP8.09□□□□□ -1.11
SSK1YLR006C ECM5Q03214 1411 aa8.08□□□□□ -1.12
SSK1YLR006C UFD4P33202 1483 aa8.05□□□□□ -1.12
SSK1YLR006C YOR1P53049 1477 aa8.04□□□□□ -1.12
SSK1YLR006C SCC2Q04002 1493 aa8.04□□□□□ -1.12
SSK1YLR006C MDS3P53094 1487 aa8.02□□□□□ -1.13
SSK1YLR006C TRM732Q03496 1420 aa8.02□□□□□ -1.13
SSK1YLR006C PEP1P32319 1579 aa8.02□□□□□ -1.13
SSK1YLR006C MYO4P32492 1471 aa8.02□□□□□ -1.13
SSK1YLR006C LEU3P08638 886 aa8.02□□□□□ -1.13
SSK1YLR006C AIM44Q99299 758 aa8□□□□□ -1.13
SSK1YLR006C MLP2P40457 1679 aa7.99□□□□□ -1.13
SSK1YLR006C TY2B-LR1P0C2J3 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-FP0CX63 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-GR2P0CX64 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-CP25384 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-DR2Q03494 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY1B-DR1Q03855 1755 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-DR3Q07791 1770 aaKnown RBP7.97□□□□□ -1.13
SSK1YLR006C TY2B-OR1Q12113 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-DR1Q12472 1770 aa7.97□□□□□ -1.13
SSK1YLR006C TY2B-OR2Q12501 1770 aa7.97□□□□□ -1.13
SSK1YLR006C DMA2P53924 522 aa7.97□□□□□ -1.13
SSK1YLR006C RPO31P04051 1460 aa7.96□□□□□ -1.13
SSK1YLR006C TY1B-DR3Q99231 1755 aa7.96□□□□□ -1.14
SSK1YLR006C YRB30P53107 440 aaPredicted RBP7.96□□□□□ -1.14
SSK1YLR006C TOP2P06786 1428 aaKnown RBP7.95□□□□□ -1.14
SSK1YLR006C SNQ2P32568 1501 aaKnown RBP7.95□□□□□ -1.14
SSK1YLR006C SMC4Q12267 1418 aa7.95□□□□□ -1.14
SSK1YLR006C YCF1P39109 1515 aaKnown RBP7.94□□□□□ -1.14
SSK1YLR006C IKI3Q06706 1349 aaKnown RBP7.93□□□□□ -1.14
SSK1YLR006C STH1P32597 1359 aa7.92□□□□□ -1.14
SSK1YLR006C TY2B-BQ12491 1770 aa7.91□□□□□ -1.14
SSK1YLR006C PDR15Q04182 1529 aaKnown RBP7.9□□□□□ -1.14
SSK1YLR006C YFR016CP43597 1233 aaKnown RBP7.85□□□□□ -1.15
SSK1YLR006C ULS1Q08562 1619 aa7.85□□□□□ -1.15
SSK1YLR006C NUP170P38181 1502 aa7.85□□□□□ -1.15
SSK1YLR006C SSM4P40318 1319 aa7.84□□□□□ -1.15
SSK1YLR006C SPP41P38904 1435 aa7.84□□□□□ -1.15
SSK1YLR006C TY1B-HO13535 1793 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-DR5P0C2I2 1755 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-DR6P0C2I3 1755 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-LR2P0C2I5 1755 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-LR3P0C2I6 1755 aaKnown RBP7.83□□□□□ -1.16
SSK1YLR006C TY1B-PR1P0C2I9 1755 aaKnown RBP7.83□□□□□ -1.16
SSK1YLR006C TY1B-PR2P0C2J0 1756 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-PR3P0C2J1 1755 aaKnown RBP7.83□□□□□ -1.16
SSK1YLR006C TY1B-JR1P47098 1755 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-ML2Q03434 1755 aaKnown RBP7.83□□□□□ -1.16
SSK1YLR006C TY1B-ER1Q03612 1755 aa7.83□□□□□ -1.16
SSK1YLR006C TY1B-ML1Q04711 1755 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms