RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C MTC1P47018 478 aaKnown RBP5.02□□□□□ -1.61
UFD4YKL010C DRS1P32892 752 aaKnown RBP4.55□□□□□ -1.68
UFD4YKL010C FAP1P53971 965 aa4.49□□□□□ -1.69
UFD4YKL010C PRI1P10363 409 aa4.28□□□□□ -1.72
UFD4YKL010C AAD16Q02895 342 aa4.25□□□□□ -1.73
UFD4YKL010C PRY3P47033 881 aa4.24□□□□□ -1.73
UFD4YKL010C INO80P53115 1489 aa4.18□□□□□ -1.74
UFD4YKL010C SPA2P23201 1466 aaKnown RBP4.16□□□□□ -1.74
UFD4YKL010C ISW2Q08773 1120 aa4.15□□□□□ -1.75
UFD4YKL010C TY1B-DR4Q07793 1604 aa4.12□□□□□ -1.75
UFD4YKL010C YCK3P39962 524 aa4.1□□□□□ -1.75
UFD4YKL010C RPG1P38249 964 aaKnown RBP4.09□□□□□ -1.76
UFD4YKL010C SGS1P35187 1447 aa4.07□□□□□ -1.76
UFD4YKL010C HAA1Q12753 694 aaKnown RBP4.05□□□□□ -1.76
UFD4YKL010C TCB3Q03640 1545 aaKnown RBP4.04□□□□□ -1.76
UFD4YKL010C DIP2Q12220 943 aaPredicted RBP4.04□□□□□ -1.76
UFD4YKL010C SSN2P38931 1420 aa3.99□□□□□ -1.77
UFD4YKL010C TSR3Q12094 313 aaKnown RBP3.98□□□□□ -1.77
UFD4YKL010C MON2P48563 1636 aaPredicted RBP3.96□□□□□ -1.78
UFD4YKL010C RSE1Q04693 1361 aaKnown RBP3.93□□□□□ -1.78
UFD4YKL010C AVT3P36062 692 aa3.92□□□□□ -1.78
UFD4YKL010C SIN3P22579 1536 aa3.91□□□□□ -1.78
UFD4YKL010C HSL1P34244 1518 aa3.91□□□□□ -1.78
UFD4YKL010C MRPL32P25348 183 aa3.84□□□□□ -1.79
UFD4YKL010C HIR3P47171 1648 aa3.84□□□□□ -1.79
UFD4YKL010C SWR1Q05471 1514 aa3.84□□□□□ -1.8
UFD4YKL010C THO2P53552 1597 aaKnown RBP3.84□□□□□ -1.8
UFD4YKL010C CHD1P32657 1468 aa3.82□□□□□ -1.8
UFD4YKL010C SPT6P23615 1451 aaKnown RBP3.82□□□□□ -1.8
UFD4YKL010C SSK2P53599 1579 aa3.82□□□□□ -1.8
UFD4YKL010C RPL17AP05740 184 aaKnown RBP3.79□□□□□ -1.8
UFD4YKL010C RPL17BP46990 184 aaKnown RBP3.79□□□□□ -1.8
UFD4YKL010C XRN1P22147 1528 aaKnown RBP3.78□□□□□ -1.8
UFD4YKL010C ESP1Q03018 1630 aa3.77□□□□□ -1.81
UFD4YKL010C REV3P14284 1504 aa3.76□□□□□ -1.81
UFD4YKL010C REB1P21538 810 aa3.76□□□□□ -1.81
UFD4YKL010C BFR2Q06631 534 aaKnown RBP3.75□□□□□ -1.81
UFD4YKL010C SKI3P17883 1432 aaKnown RBP3.74□□□□□ -1.81
UFD4YKL010C ATG2P53855 1592 aa3.74□□□□□ -1.81
UFD4YKL010C MYO2P19524 1574 aaKnown RBP3.73□□□□□ -1.81
UFD4YKL010C YGL015CP33199 130 aa3.73□□□□□ -1.81
UFD4YKL010C PEP1P32319 1579 aa3.71□□□□□ -1.82
UFD4YKL010C SPT21P35209 758 aa3.7□□□□□ -1.82
UFD4YKL010C TY1B-DR3Q99231 1755 aa3.67□□□□□ -1.82
UFD4YKL010C YPK9Q12697 1472 aa3.67□□□□□ -1.82
UFD4YKL010C POL1P13382 1468 aa3.67□□□□□ -1.82
UFD4YKL010C ECM5Q03214 1411 aa3.67□□□□□ -1.82
UFD4YKL010C TY2B-LR1P0C2J3 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-FP0CX63 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-GR2P0CX64 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-CP25384 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-DR2Q03494 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY1B-DR1Q03855 1755 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-DR3Q07791 1770 aaKnown RBP3.66□□□□□ -1.82
UFD4YKL010C TY2B-OR1Q12113 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-DR1Q12472 1770 aa3.66□□□□□ -1.82
UFD4YKL010C TY2B-OR2Q12501 1770 aa3.66□□□□□ -1.82
UFD4YKL010C NUP170P38181 1502 aa3.66□□□□□ -1.82
UFD4YKL010C KOG1P38873 1557 aa3.66□□□□□ -1.82
UFD4YKL010C CDC27P38042 758 aa3.65□□□□□ -1.82
UFD4YKL010C YKR023WP36119 530 aaKnown RBP3.64□□□□□ -1.83
UFD4YKL010C STU1P38198 1513 aa3.64□□□□□ -1.83
UFD4YKL010C TY2B-BQ12491 1770 aa3.64□□□□□ -1.83
UFD4YKL010C TY1B-HO13535 1793 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-DR5P0C2I2 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-DR6P0C2I3 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-LR2P0C2I5 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-LR3P0C2I6 1755 aaKnown RBP3.63□□□□□ -1.83
UFD4YKL010C TY1B-PR1P0C2I9 1755 aaKnown RBP3.63□□□□□ -1.83
UFD4YKL010C TY1B-PR2P0C2J0 1756 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-PR3P0C2J1 1755 aaKnown RBP3.63□□□□□ -1.83
UFD4YKL010C TY1B-JR1P47098 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-ML2Q03434 1755 aaKnown RBP3.63□□□□□ -1.83
UFD4YKL010C TY1B-ER1Q03612 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-ML1Q04711 1755 aaKnown RBP3.63□□□□□ -1.83
UFD4YKL010C TY1B-GR2Q12269 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-OLQ12273 1755 aa3.63□□□□□ -1.83
UFD4YKL010C TY1B-PLQ12414 1755 aaKnown RBP3.63□□□□□ -1.83
UFD4YKL010C TY1B-BRQ12193 1756 aa3.62□□□□□ -1.83
UFD4YKL010C TY1B-GR3Q12316 1755 aa3.62□□□□□ -1.83
UFD4YKL010C TY1B-ORQ92393 1755 aa3.62□□□□□ -1.83
UFD4YKL010C MMS22Q06164 1454 aa3.61□□□□□ -1.83
UFD4YKL010C UBP10P53874 792 aaPredicted RBP3.6□□□□□ -1.83
UFD4YKL010C RPO31P04051 1460 aa3.6□□□□□ -1.83
UFD4YKL010C BUD4P47136 1447 aa3.6□□□□□ -1.83
UFD4YKL010C MYO4P32492 1471 aa3.6□□□□□ -1.83
UFD4YKL010C YOR1P53049 1477 aa3.59□□□□□ -1.83
UFD4YKL010C SCC2Q04002 1493 aa3.59□□□□□ -1.83
UFD4YKL010C YCF1P39109 1515 aaKnown RBP3.59□□□□□ -1.84
UFD4YKL010C TFC8Q12308 588 aa3.57□□□□□ -1.84
UFD4YKL010C DNA2P38859 1522 aa3.57□□□□□ -1.84
UFD4YKL010C MDS3P53094 1487 aa3.56□□□□□ -1.84
UFD4YKL010C RKR1Q04781 1562 aa3.56□□□□□ -1.84
UFD4YKL010C SMC4Q12267 1418 aa3.56□□□□□ -1.84
UFD4YKL010C MLP2P40457 1679 aa3.55□□□□□ -1.84
UFD4YKL010C TY1B-JR2P47100 1755 aaKnown RBP3.55□□□□□ -1.84
UFD4YKL010C TY1B-ER2Q03619 1755 aa3.55□□□□□ -1.84
UFD4YKL010C TY1B-MR1Q04214 1755 aa3.55□□□□□ -1.84
UFD4YKL010C TY1B-MR2Q04670 1755 aaKnown RBP3.55□□□□□ -1.84
UFD4YKL010C TY1B-LR1Q12088 1755 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms