RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeastyeast

Gene PRE3, Length 648 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE3YJL001W MTC1P47018 478 aaKnown RBP14.52□□□□□ -0.09
PRE3YJL001W DRS1P32892 752 aaKnown RBP14.31□□□□□ -0.12
PRE3YJL001W MON2P48563 1636 aaPredicted RBP13.8□□□□□ -0.2
PRE3YJL001W INO80P53115 1489 aa13.67□□□□□ -0.22
PRE3YJL001W FAP1P53971 965 aa13.12□□□□□ -0.31
PRE3YJL001W DNA2P38859 1522 aa13.08□□□□□ -0.32
PRE3YJL001W SWR1Q05471 1514 aa13.05□□□□□ -0.32
PRE3YJL001W TY1B-DR4Q07793 1604 aa12.91□□□□□ -0.34
PRE3YJL001W KOG1P38873 1557 aa12.87□□□□□ -0.35
PRE3YJL001W TCB3Q03640 1545 aaKnown RBP12.87□□□□□ -0.35
PRE3YJL001W RSE1Q04693 1361 aaKnown RBP12.57□□□□□ -0.4
PRE3YJL001W BFR2Q06631 534 aaKnown RBP12.56□□□□□ -0.4
PRE3YJL001W SGS1P35187 1447 aa12.52□□□□□ -0.41
PRE3YJL001W HSL1P34244 1518 aa12.41□□□□□ -0.42
PRE3YJL001W SPT6P23615 1451 aaKnown RBP12.36□□□□□ -0.43
PRE3YJL001W PRY3P47033 881 aa12.33□□□□□ -0.44
PRE3YJL001W PRI1P10363 409 aa12.29□□□□□ -0.44
PRE3YJL001W AAD16Q02895 342 aa12.23□□□□□ -0.45
PRE3YJL001W SPA2P23201 1466 aaKnown RBP12.19□□□□□ -0.46
PRE3YJL001W ECM5Q03214 1411 aa12.11□□□□□ -0.47
PRE3YJL001W HIR3P47171 1648 aa12.11□□□□□ -0.47
PRE3YJL001W TFA1P36100 482 aa12.07□□□□□ -0.48
PRE3YJL001W THO2P53552 1597 aaKnown RBP12.07□□□□□ -0.48
PRE3YJL001W ISW2Q08773 1120 aa12.07□□□□□ -0.48
PRE3YJL001W DIP2Q12220 943 aaPredicted RBP12.04□□□□□ -0.48
PRE3YJL001W BUD4P47136 1447 aa12.03□□□□□ -0.48
PRE3YJL001W AVT3P36062 692 aa11.97□□□□□ -0.49
PRE3YJL001W MDS3P53094 1487 aa11.96□□□□□ -0.49
PRE3YJL001W RPG1P38249 964 aaKnown RBP11.91□□□□□ -0.5
PRE3YJL001W PEP1P32319 1579 aa11.85□□□□□ -0.51
PRE3YJL001W XRN1P22147 1528 aaKnown RBP11.83□□□□□ -0.52
PRE3YJL001W REV3P14284 1504 aa11.76□□□□□ -0.53
PRE3YJL001W ATG2P53855 1592 aa11.75□□□□□ -0.53
PRE3YJL001W BPT1P14772 1559 aa11.63□□□□□ -0.55
PRE3YJL001W HAA1Q12753 694 aaKnown RBP11.63□□□□□ -0.55
PRE3YJL001W YCK3P39962 524 aa11.62□□□□□ -0.55
PRE3YJL001W TSR3Q12094 313 aaKnown RBP11.56□□□□□ -0.56
PRE3YJL001W SIN3P22579 1536 aa11.5□□□□□ -0.57
PRE3YJL001W SSK2P53599 1579 aa11.5□□□□□ -0.57
PRE3YJL001W SSN2P38931 1420 aa11.48□□□□□ -0.57
PRE3YJL001W YCF1P39109 1515 aaKnown RBP11.45□□□□□ -0.58
PRE3YJL001W SKI3P17883 1432 aaKnown RBP11.43□□□□□ -0.58
PRE3YJL001W TAF2P23255 1407 aa11.42□□□□□ -0.58
PRE3YJL001W ESP1Q03018 1630 aa11.35□□□□□ -0.59
PRE3YJL001W UFD4P33202 1483 aa11.28□□□□□ -0.6
PRE3YJL001W SCC2Q04002 1493 aa11.21□□□□□ -0.61
PRE3YJL001W YPK9Q12697 1472 aa11.19□□□□□ -0.62
PRE3YJL001W MRPL32P25348 183 aa11.17□□□□□ -0.62
PRE3YJL001W CDC25P04821 1589 aa11.16□□□□□ -0.62
PRE3YJL001W MYO2P19524 1574 aaKnown RBP11.15□□□□□ -0.62
PRE3YJL001W DNF1P32660 1571 aa11.14□□□□□ -0.63
PRE3YJL001W RPO31P04051 1460 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-LR1P0C2J3 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-FP0CX63 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-GR2P0CX64 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-CP25384 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-DR2Q03494 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY1B-DR1Q03855 1755 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-DR3Q07791 1770 aaKnown RBP11.13□□□□□ -0.63
PRE3YJL001W TY2B-OR1Q12113 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-DR1Q12472 1770 aa11.13□□□□□ -0.63
PRE3YJL001W TY2B-OR2Q12501 1770 aa11.13□□□□□ -0.63
PRE3YJL001W CHD1P32657 1468 aa11.12□□□□□ -0.63
PRE3YJL001W ESC1Q03661 1658 aaKnown RBP11.12□□□□□ -0.63
PRE3YJL001W MET5P47169 1442 aa11.11□□□□□ -0.63
PRE3YJL001W TY1B-BRQ12193 1756 aa11.1□□□□□ -0.63
PRE3YJL001W TY1B-GR3Q12316 1755 aa11.1□□□□□ -0.63
PRE3YJL001W TY1B-ORQ92393 1755 aa11.1□□□□□ -0.63
PRE3YJL001W RPL17AP05740 184 aaKnown RBP11.09□□□□□ -0.63
PRE3YJL001W RPL17BP46990 184 aaKnown RBP11.09□□□□□ -0.63
PRE3YJL001W REB1P21538 810 aa11.07□□□□□ -0.64
PRE3YJL001W RKR1Q04781 1562 aa11.03□□□□□ -0.64
PRE3YJL001W RPA190P10964 1664 aaKnown RBP11.01□□□□□ -0.65
PRE3YJL001W LTE1P07866 1435 aa11.01□□□□□ -0.65
PRE3YJL001W PAN1P32521 1480 aa11□□□□□ -0.65
PRE3YJL001W MIF2P35201 549 aa11□□□□□ -0.65
PRE3YJL001W BNI1P41832 1953 aa10.99□□□□□ -0.65
PRE3YJL001W TY1B-HO13535 1793 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-DR5P0C2I2 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-DR6P0C2I3 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-LR2P0C2I5 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-LR3P0C2I6 1755 aaKnown RBP10.98□□□□□ -0.65
PRE3YJL001W TY1B-PR1P0C2I9 1755 aaKnown RBP10.98□□□□□ -0.65
PRE3YJL001W TY1B-PR2P0C2J0 1756 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-PR3P0C2J1 1755 aaKnown RBP10.98□□□□□ -0.65
PRE3YJL001W TY1B-JR1P47098 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-ML2Q03434 1755 aaKnown RBP10.98□□□□□ -0.65
PRE3YJL001W TY1B-ER1Q03612 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-ML1Q04711 1755 aaKnown RBP10.98□□□□□ -0.65
PRE3YJL001W TY1B-GR2Q12269 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-OLQ12273 1755 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-PLQ12414 1755 aaKnown RBP10.98□□□□□ -0.65
PRE3YJL001W TY2B-BQ12491 1770 aa10.98□□□□□ -0.65
PRE3YJL001W TY1B-DR3Q99231 1755 aa10.93□□□□□ -0.66
PRE3YJL001W TOP2P06786 1428 aaKnown RBP10.92□□□□□ -0.66
PRE3YJL001W RQC2Q12532 1038 aaKnown RBP10.89□□□□□ -0.67
PRE3YJL001W GEA2P39993 1459 aaKnown RBP10.87□□□□□ -0.67
PRE3YJL001W MMS22Q06164 1454 aa10.85□□□□□ -0.67
PRE3YJL001W YRF1-1P0CX20 1796 aa10.81□□□□□ -0.68
PRE3YJL001W YRF1-5P0CX21 1796 aa10.81□□□□□ -0.68
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms