RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W MON2P48563 1636 aaPredicted RBP12.84□□□□□ -0.35
RPN11YFR004W INO80P53115 1489 aa12.72□□□□□ -0.37
RPN11YFR004W MTC1P47018 478 aaKnown RBP12.35□□□□□ -0.43
RPN11YFR004W DNA2P38859 1522 aa12.16□□□□□ -0.46
RPN11YFR004W SWR1Q05471 1514 aa12.12□□□□□ -0.47
RPN11YFR004W DRS1P32892 752 aaKnown RBP12.03□□□□□ -0.48
RPN11YFR004W KOG1P38873 1557 aa12□□□□□ -0.49
RPN11YFR004W TY1B-DR4Q07793 1604 aa11.97□□□□□ -0.49
RPN11YFR004W TCB3Q03640 1545 aaKnown RBP11.95□□□□□ -0.5
RPN11YFR004W RSE1Q04693 1361 aaKnown RBP11.74□□□□□ -0.53
RPN11YFR004W SGS1P35187 1447 aa11.57□□□□□ -0.56
RPN11YFR004W HSL1P34244 1518 aa11.49□□□□□ -0.57
RPN11YFR004W SPT6P23615 1451 aaKnown RBP11.45□□□□□ -0.58
RPN11YFR004W SPA2P23201 1466 aaKnown RBP11.3□□□□□ -0.6
RPN11YFR004W ECM5Q03214 1411 aa11.25□□□□□ -0.61
RPN11YFR004W HIR3P47171 1648 aa11.22□□□□□ -0.61
RPN11YFR004W THO2P53552 1597 aaKnown RBP11.22□□□□□ -0.61
RPN11YFR004W BUD4P47136 1447 aa11.18□□□□□ -0.62
RPN11YFR004W MDS3P53094 1487 aa11.1□□□□□ -0.63
RPN11YFR004W PEP1P32319 1579 aa10.99□□□□□ -0.65
RPN11YFR004W REV3P14284 1504 aa10.94□□□□□ -0.66
RPN11YFR004W XRN1P22147 1528 aaKnown RBP10.94□□□□□ -0.66
RPN11YFR004W ATG2P53855 1592 aa10.88□□□□□ -0.67
RPN11YFR004W BPT1P14772 1559 aa10.82□□□□□ -0.68
RPN11YFR004W FAP1P53971 965 aa10.78□□□□□ -0.68
RPN11YFR004W SSK2P53599 1579 aa10.69□□□□□ -0.7
RPN11YFR004W SIN3P22579 1536 aa10.65□□□□□ -0.7
RPN11YFR004W BFR2Q06631 534 aaKnown RBP10.65□□□□□ -0.7
RPN11YFR004W TFA1P36100 482 aa10.64□□□□□ -0.71
RPN11YFR004W YCF1P39109 1515 aaKnown RBP10.63□□□□□ -0.71
RPN11YFR004W SKI3P17883 1432 aaKnown RBP10.58□□□□□ -0.72
RPN11YFR004W SSN2P38931 1420 aa10.58□□□□□ -0.72
RPN11YFR004W TAF2P23255 1407 aa10.53□□□□□ -0.72
RPN11YFR004W ESP1Q03018 1630 aa10.5□□□□□ -0.73
RPN11YFR004W UFD4P33202 1483 aa10.44□□□□□ -0.74
RPN11YFR004W DIP2Q12220 943 aaPredicted RBP10.39□□□□□ -0.75
RPN11YFR004W SCC2Q04002 1493 aa10.38□□□□□ -0.75
RPN11YFR004W YPK9Q12697 1472 aa10.36□□□□□ -0.75
RPN11YFR004W CDC25P04821 1589 aa10.35□□□□□ -0.75
RPN11YFR004W MYO2P19524 1574 aaKnown RBP10.35□□□□□ -0.75
RPN11YFR004W MET5P47169 1442 aa10.35□□□□□ -0.75
RPN11YFR004W DNF1P32660 1571 aa10.33□□□□□ -0.76
RPN11YFR004W ESC1Q03661 1658 aaKnown RBP10.32□□□□□ -0.76
RPN11YFR004W RPO31P04051 1460 aa10.31□□□□□ -0.76
RPN11YFR004W CHD1P32657 1468 aa10.31□□□□□ -0.76
RPN11YFR004W MIF2P35201 549 aa10.31□□□□□ -0.76
RPN11YFR004W TY2B-LR1P0C2J3 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-FP0CX63 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-GR2P0CX64 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-CP25384 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-DR2Q03494 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY1B-DR1Q03855 1755 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-DR3Q07791 1770 aaKnown RBP10.29□□□□□ -0.76
RPN11YFR004W TY2B-OR1Q12113 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-DR1Q12472 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY2B-OR2Q12501 1770 aa10.29□□□□□ -0.76
RPN11YFR004W TY1B-BRQ12193 1756 aa10.28□□□□□ -0.76
RPN11YFR004W TY1B-GR3Q12316 1755 aa10.28□□□□□ -0.76
RPN11YFR004W TY1B-ORQ92393 1755 aa10.28□□□□□ -0.76
RPN11YFR004W LTE1P07866 1435 aa10.27□□□□□ -0.77
RPN11YFR004W RKR1Q04781 1562 aa10.25□□□□□ -0.77
RPN11YFR004W RPA190P10964 1664 aaKnown RBP10.23□□□□□ -0.77
RPN11YFR004W ISW2Q08773 1120 aa10.23□□□□□ -0.77
RPN11YFR004W BNI1P41832 1953 aa10.23□□□□□ -0.77
RPN11YFR004W PAN1P32521 1480 aa10.21□□□□□ -0.78
RPN11YFR004W PRI1P10363 409 aa10.17□□□□□ -0.78
RPN11YFR004W TY1B-HO13535 1793 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-DR5P0C2I2 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-DR6P0C2I3 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-LR2P0C2I5 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-LR3P0C2I6 1755 aaKnown RBP10.16□□□□□ -0.78
RPN11YFR004W TY1B-PR1P0C2I9 1755 aaKnown RBP10.16□□□□□ -0.78
RPN11YFR004W TY1B-PR2P0C2J0 1756 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-PR3P0C2J1 1755 aaKnown RBP10.16□□□□□ -0.78
RPN11YFR004W TY1B-JR1P47098 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-ML2Q03434 1755 aaKnown RBP10.16□□□□□ -0.78
RPN11YFR004W TY1B-ER1Q03612 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-ML1Q04711 1755 aaKnown RBP10.16□□□□□ -0.78
RPN11YFR004W TY1B-GR2Q12269 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-OLQ12273 1755 aa10.16□□□□□ -0.78
RPN11YFR004W TY1B-PLQ12414 1755 aaKnown RBP10.16□□□□□ -0.78
RPN11YFR004W TY2B-BQ12491 1770 aa10.16□□□□□ -0.78
RPN11YFR004W GEA2P39993 1459 aaKnown RBP10.13□□□□□ -0.79
RPN11YFR004W TY1B-DR3Q99231 1755 aa10.11□□□□□ -0.79
RPN11YFR004W TOP2P06786 1428 aaKnown RBP10.1□□□□□ -0.79
RPN11YFR004W AAD16Q02895 342 aa10.1□□□□□ -0.79
RPN11YFR004W RPG1P38249 964 aaKnown RBP10.08□□□□□ -0.8
RPN11YFR004W RQC2Q12532 1038 aaKnown RBP10.08□□□□□ -0.8
RPN11YFR004W AVT3P36062 692 aa10.07□□□□□ -0.8
RPN11YFR004W PRY3P47033 881 aa10.07□□□□□ -0.8
RPN11YFR004W MMS22Q06164 1454 aa10.04□□□□□ -0.8
RPN11YFR004W ITT1Q04638 464 aa10.04□□□□□ -0.8
RPN11YFR004W YRF1-1P0CX20 1796 aa10.02□□□□□ -0.81
RPN11YFR004W YRF1-5P0CX21 1796 aa10.02□□□□□ -0.81
RPN11YFR004W YRF1-8P0CX22 1796 aa10.02□□□□□ -0.81
RPN11YFR004W TRM732Q03496 1420 aa10□□□□□ -0.81
RPN11YFR004W IRC20Q06554 1556 aa9.98□□□□□ -0.81
RPN11YFR004W MMS1Q06211 1407 aa9.98□□□□□ -0.81
RPN11YFR004W ABP1P15891 592 aaKnown RBP9.95□□□□□ -0.82
RPN11YFR004W POL1P13382 1468 aa9.95□□□□□ -0.82
Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms