RNA–Protein interactions for RNA: YDL078C

MDH3, Transcript of Peroxisomal malate dehydrogenase, yeastyeast

Gene MDH3, Length 1,032 nt, Biotype protein coding, Subcellular localisation Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MDH3YDL078C MON2P48563 1636 aaPredicted RBP11.35□□□□□ -0.59
MDH3YDL078C INO80P53115 1489 aa11.35□□□□□ -0.59
MDH3YDL078C MTC1P47018 478 aaKnown RBP11.32□□□□□ -0.6
MDH3YDL078C DRS1P32892 752 aaKnown RBP10.98□□□□□ -0.65
MDH3YDL078C TCB3Q03640 1545 aaKnown RBP10.98□□□□□ -0.65
MDH3YDL078C SGS1P35187 1447 aa10.93□□□□□ -0.66
MDH3YDL078C TY1B-DR4Q07793 1604 aa10.89□□□□□ -0.67
MDH3YDL078C SWR1Q05471 1514 aa10.89□□□□□ -0.67
MDH3YDL078C DNA2P38859 1522 aa10.81□□□□□ -0.68
MDH3YDL078C FAP1P53971 965 aa10.8□□□□□ -0.68
MDH3YDL078C KOG1P38873 1557 aa10.71□□□□□ -0.69
MDH3YDL078C HSL1P34244 1518 aa10.55□□□□□ -0.72
MDH3YDL078C SPT6P23615 1451 aaKnown RBP10.55□□□□□ -0.72
MDH3YDL078C SPA2P23201 1466 aaKnown RBP10.47□□□□□ -0.73
MDH3YDL078C HIR3P47171 1648 aa10.33□□□□□ -0.76
MDH3YDL078C RSE1Q04693 1361 aaKnown RBP10.32□□□□□ -0.76
MDH3YDL078C ECM5Q03214 1411 aa10.24□□□□□ -0.77
MDH3YDL078C THO2P53552 1597 aaKnown RBP10.21□□□□□ -0.78
MDH3YDL078C BUD4P47136 1447 aa10.19□□□□□ -0.78
MDH3YDL078C XRN1P22147 1528 aaKnown RBP10.18□□□□□ -0.78
MDH3YDL078C SSN2P38931 1420 aa10.16□□□□□ -0.78
MDH3YDL078C PRY3P47033 881 aa10.15□□□□□ -0.78
MDH3YDL078C MDS3P53094 1487 aa10.05□□□□□ -0.8
MDH3YDL078C REV3P14284 1504 aa10□□□□□ -0.81
MDH3YDL078C PEP1P32319 1579 aa9.97□□□□□ -0.81
MDH3YDL078C ATG2P53855 1592 aa9.97□□□□□ -0.81
MDH3YDL078C SIN3P22579 1536 aa9.91□□□□□ -0.82
MDH3YDL078C TAF2P23255 1407 aa9.88□□□□□ -0.83
MDH3YDL078C SKI3P17883 1432 aaKnown RBP9.83□□□□□ -0.84
MDH3YDL078C AAD16Q02895 342 aa9.83□□□□□ -0.84
MDH3YDL078C SSK2P53599 1579 aa9.82□□□□□ -0.84
MDH3YDL078C PRI1P10363 409 aa9.81□□□□□ -0.84
MDH3YDL078C BPT1P14772 1559 aa9.8□□□□□ -0.84
MDH3YDL078C ESP1Q03018 1630 aa9.78□□□□□ -0.84
MDH3YDL078C MYO2P19524 1574 aaKnown RBP9.68□□□□□ -0.86
MDH3YDL078C BFR2Q06631 534 aaKnown RBP9.65□□□□□ -0.86
MDH3YDL078C UFD4P33202 1483 aa9.65□□□□□ -0.87
MDH3YDL078C YPK9Q12697 1472 aa9.65□□□□□ -0.87
MDH3YDL078C YCF1P39109 1515 aaKnown RBP9.63□□□□□ -0.87
MDH3YDL078C SCC2Q04002 1493 aa9.61□□□□□ -0.87
MDH3YDL078C RPO31P04051 1460 aa9.57□□□□□ -0.88
MDH3YDL078C ISW2Q08773 1120 aa9.53□□□□□ -0.88
MDH3YDL078C TY2B-LR1P0C2J3 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-FP0CX63 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-GR2P0CX64 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-CP25384 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-DR2Q03494 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY1B-DR1Q03855 1755 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-DR3Q07791 1770 aaKnown RBP9.5□□□□□ -0.89
MDH3YDL078C TY2B-OR1Q12113 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-DR1Q12472 1770 aa9.5□□□□□ -0.89
MDH3YDL078C TY2B-OR2Q12501 1770 aa9.5□□□□□ -0.89
MDH3YDL078C HAA1Q12753 694 aaKnown RBP9.48□□□□□ -0.89
MDH3YDL078C CDC25P04821 1589 aa9.47□□□□□ -0.89
MDH3YDL078C YCK3P39962 524 aa9.47□□□□□ -0.89
MDH3YDL078C CHD1P32657 1468 aa9.47□□□□□ -0.89
MDH3YDL078C TOP2P06786 1428 aaKnown RBP9.45□□□□□ -0.9
MDH3YDL078C RPG1P38249 964 aaKnown RBP9.44□□□□□ -0.9
MDH3YDL078C TY1B-BRQ12193 1756 aa9.44□□□□□ -0.9
MDH3YDL078C TY1B-GR3Q12316 1755 aa9.44□□□□□ -0.9
MDH3YDL078C TY1B-ORQ92393 1755 aa9.44□□□□□ -0.9
MDH3YDL078C RQC2Q12532 1038 aaKnown RBP9.43□□□□□ -0.9
MDH3YDL078C ESC1Q03661 1658 aaKnown RBP9.42□□□□□ -0.9
MDH3YDL078C RKR1Q04781 1562 aa9.41□□□□□ -0.9
MDH3YDL078C POL1P13382 1468 aa9.4□□□□□ -0.9
MDH3YDL078C PAN1P32521 1480 aa9.4□□□□□ -0.91
MDH3YDL078C TY2B-BQ12491 1770 aa9.39□□□□□ -0.91
MDH3YDL078C TY1B-DR3Q99231 1755 aa9.38□□□□□ -0.91
MDH3YDL078C DNF1P32660 1571 aa9.37□□□□□ -0.91
MDH3YDL078C MET5P47169 1442 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-HO13535 1793 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-DR5P0C2I2 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-DR6P0C2I3 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-LR2P0C2I5 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-LR3P0C2I6 1755 aaKnown RBP9.37□□□□□ -0.91
MDH3YDL078C TY1B-PR1P0C2I9 1755 aaKnown RBP9.37□□□□□ -0.91
MDH3YDL078C TY1B-PR2P0C2J0 1756 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-PR3P0C2J1 1755 aaKnown RBP9.37□□□□□ -0.91
MDH3YDL078C TY1B-JR1P47098 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-ML2Q03434 1755 aaKnown RBP9.37□□□□□ -0.91
MDH3YDL078C TY1B-ER1Q03612 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-ML1Q04711 1755 aaKnown RBP9.37□□□□□ -0.91
MDH3YDL078C TY1B-GR2Q12269 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-OLQ12273 1755 aa9.37□□□□□ -0.91
MDH3YDL078C TY1B-PLQ12414 1755 aaKnown RBP9.37□□□□□ -0.91
MDH3YDL078C STU1P38198 1513 aa9.33□□□□□ -0.92
MDH3YDL078C MMS22Q06164 1454 aa9.33□□□□□ -0.92
MDH3YDL078C SMC4Q12267 1418 aa9.32□□□□□ -0.92
MDH3YDL078C YOR1P53049 1477 aa9.32□□□□□ -0.92
MDH3YDL078C RPA190P10964 1664 aaKnown RBP9.32□□□□□ -0.92
MDH3YDL078C TFA1P36100 482 aa9.27□□□□□ -0.93
MDH3YDL078C TSR3Q12094 313 aaKnown RBP9.27□□□□□ -0.93
MDH3YDL078C TRM732Q03496 1420 aa9.26□□□□□ -0.93
MDH3YDL078C SPP41P38904 1435 aa9.24□□□□□ -0.93
MDH3YDL078C DIP2Q12220 943 aaPredicted RBP9.24□□□□□ -0.93
MDH3YDL078C LTE1P07866 1435 aa9.23□□□□□ -0.93
MDH3YDL078C AVT3P36062 692 aa9.2□□□□□ -0.94
MDH3YDL078C YTA7P40340 1379 aa9.19□□□□□ -0.94
MDH3YDL078C TY1B-JR2P47100 1755 aaKnown RBP9.19□□□□□ -0.94
MDH3YDL078C TY1B-ER2Q03619 1755 aa9.19□□□□□ -0.94
Retrieved 100 of 5,963 RNA–protein pairs in 24.3 ms