RNA–Protein interactions for RNA: YCL059C

KRR1, Transcript of Nucleolar protein required for rRNA synthesis and ribosomal assembly, yeastyeast

Gene KRR1, Length 951 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
KRR1YCL059C SGS1P35187 1447 aa14.16□□□□□ -0.14
KRR1YCL059C INO80P53115 1489 aa13.74□□□□□ -0.21
KRR1YCL059C SPA2P23201 1466 aaKnown RBP13.6□□□□□ -0.23
KRR1YCL059C SSN2P38931 1420 aa13.55□□□□□ -0.24
KRR1YCL059C DRS1P32892 752 aaKnown RBP13.51□□□□□ -0.25
KRR1YCL059C TCB3Q03640 1545 aaKnown RBP13.47□□□□□ -0.25
KRR1YCL059C SPT6P23615 1451 aaKnown RBP13.03□□□□□ -0.32
KRR1YCL059C TY1B-DR4Q07793 1604 aa13.02□□□□□ -0.33
KRR1YCL059C HSL1P34244 1518 aa12.95□□□□□ -0.34
KRR1YCL059C XRN1P22147 1528 aaKnown RBP12.83□□□□□ -0.35
KRR1YCL059C MON2P48563 1636 aaPredicted RBP12.81□□□□□ -0.36
KRR1YCL059C SWR1Q05471 1514 aa12.77□□□□□ -0.37
KRR1YCL059C HIR3P47171 1648 aa12.76□□□□□ -0.37
KRR1YCL059C TAF2P23255 1407 aa12.65□□□□□ -0.38
KRR1YCL059C REV3P14284 1504 aa12.58□□□□□ -0.4
KRR1YCL059C MTC1P47018 478 aaKnown RBP12.58□□□□□ -0.4
KRR1YCL059C THO2P53552 1597 aaKnown RBP12.51□□□□□ -0.41
KRR1YCL059C SKI3P17883 1432 aaKnown RBP12.45□□□□□ -0.42
KRR1YCL059C SIN3P22579 1536 aa12.42□□□□□ -0.42
KRR1YCL059C SAS10Q12136 610 aaPredicted RBP12.41□□□□□ -0.42
KRR1YCL059C KOG1P38873 1557 aa12.39□□□□□ -0.43
KRR1YCL059C BUD4P47136 1447 aa12.37□□□□□ -0.43
KRR1YCL059C SSK2P53599 1579 aa12.37□□□□□ -0.43
KRR1YCL059C DNA2P38859 1522 aa12.37□□□□□ -0.43
KRR1YCL059C YTA7P40340 1379 aa12.35□□□□□ -0.43
KRR1YCL059C ECM5Q03214 1411 aa12.35□□□□□ -0.43
KRR1YCL059C MYO2P19524 1574 aaKnown RBP12.35□□□□□ -0.43
KRR1YCL059C MMS22Q06164 1454 aa12.28□□□□□ -0.44
KRR1YCL059C TAF7Q05021 590 aa12.28□□□□□ -0.44
KRR1YCL059C CHD1P32657 1468 aa12.27□□□□□ -0.44
KRR1YCL059C STU1P38198 1513 aa12.24□□□□□ -0.45
KRR1YCL059C ESP1Q03018 1630 aa12.24□□□□□ -0.45
KRR1YCL059C POL1P13382 1468 aa12.21□□□□□ -0.46
KRR1YCL059C YPK9Q12697 1472 aa12.16□□□□□ -0.46
KRR1YCL059C RQC2Q12532 1038 aaKnown RBP12.12□□□□□ -0.47
KRR1YCL059C ATG2P53855 1592 aa12.08□□□□□ -0.48
KRR1YCL059C IFH1P39520 1085 aa12.04□□□□□ -0.48
KRR1YCL059C STH1P32597 1359 aa12.03□□□□□ -0.48
KRR1YCL059C YOR1P53049 1477 aa12.02□□□□□ -0.48
KRR1YCL059C MDS3P53094 1487 aa12.02□□□□□ -0.48
KRR1YCL059C RKR1Q04781 1562 aa12.02□□□□□ -0.49
KRR1YCL059C SCC2Q04002 1493 aa12.01□□□□□ -0.49
KRR1YCL059C TOP2P06786 1428 aaKnown RBP12□□□□□ -0.49
KRR1YCL059C MYO4P32492 1471 aa11.99□□□□□ -0.49
KRR1YCL059C UFD4P33202 1483 aa11.99□□□□□ -0.49
KRR1YCL059C BPT1P14772 1559 aa11.98□□□□□ -0.49
KRR1YCL059C SMC4Q12267 1418 aa11.98□□□□□ -0.49
KRR1YCL059C IKI3Q06706 1349 aaKnown RBP11.98□□□□□ -0.49
KRR1YCL059C RPO31P04051 1460 aa11.96□□□□□ -0.49
KRR1YCL059C RSE1Q04693 1361 aaKnown RBP11.95□□□□□ -0.5
KRR1YCL059C PEP1P32319 1579 aa11.92□□□□□ -0.5
KRR1YCL059C RTT106P40161 455 aa11.87□□□□□ -0.51
KRR1YCL059C TRM732Q03496 1420 aa11.86□□□□□ -0.51
KRR1YCL059C SNQ2P32568 1501 aaKnown RBP11.83□□□□□ -0.52
KRR1YCL059C YCF1P39109 1515 aaKnown RBP11.82□□□□□ -0.52
KRR1YCL059C SPP41P38904 1435 aa11.77□□□□□ -0.53
KRR1YCL059C GEA1P47102 1408 aaPredicted RBP11.73□□□□□ -0.53
KRR1YCL059C PAN1P32521 1480 aa11.72□□□□□ -0.53
KRR1YCL059C SSM4P40318 1319 aa11.69□□□□□ -0.54
KRR1YCL059C POL5P39985 1022 aaKnown RBP11.68□□□□□ -0.54
KRR1YCL059C TSC11P40061 1430 aa11.67□□□□□ -0.54
KRR1YCL059C PDR15Q04182 1529 aaKnown RBP11.65□□□□□ -0.55
KRR1YCL059C MLP2P40457 1679 aa11.59□□□□□ -0.55
KRR1YCL059C CKB1P43639 278 aa11.58□□□□□ -0.56
KRR1YCL059C TY2B-LR1P0C2J3 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-FP0CX63 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-GR2P0CX64 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-CP25384 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-DR2Q03494 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY1B-DR1Q03855 1755 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-DR3Q07791 1770 aaKnown RBP11.56□□□□□ -0.56
KRR1YCL059C TY2B-OR1Q12113 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-DR1Q12472 1770 aa11.56□□□□□ -0.56
KRR1YCL059C TY2B-OR2Q12501 1770 aa11.56□□□□□ -0.56
KRR1YCL059C VTH1P40438 1549 aa11.56□□□□□ -0.56
KRR1YCL059C VTH2P40890 1549 aa11.56□□□□□ -0.56
KRR1YCL059C TY1B-DR3Q99231 1755 aa11.52□□□□□ -0.57
KRR1YCL059C CDC25P04821 1589 aa11.51□□□□□ -0.57
KRR1YCL059C NOP7P53261 605 aaKnown RBP11.51□□□□□ -0.57
KRR1YCL059C BUD21Q08492 214 aaPredicted RBP11.5□□□□□ -0.57
KRR1YCL059C CAT8P39113 1433 aa11.5□□□□□ -0.57
KRR1YCL059C SNT2P53127 1403 aa11.5□□□□□ -0.57
KRR1YCL059C MET10P39692 1035 aa11.49□□□□□ -0.57
KRR1YCL059C TY2B-BQ12491 1770 aa11.47□□□□□ -0.57
KRR1YCL059C NUP170P38181 1502 aa11.47□□□□□ -0.57
KRR1YCL059C VPS15P22219 1454 aa11.47□□□□□ -0.57
KRR1YCL059C GEA2P39993 1459 aaKnown RBP11.46□□□□□ -0.57
KRR1YCL059C PAF1P38351 445 aa11.46□□□□□ -0.57
KRR1YCL059C NSR1P27476 414 aaKnown RBP RIP-Chip data11.44□□□□□ -0.58not detected
KRR1YCL059C ULS1Q08562 1619 aa11.44□□□□□ -0.58
KRR1YCL059C ENP1P38333 483 aaKnown RBP11.43□□□□□ -0.58
KRR1YCL059C NOP2P40991 618 aaKnown RBP11.42□□□□□ -0.58
KRR1YCL059C SRB8P25648 1427 aa11.42□□□□□ -0.58
KRR1YCL059C SEC3P33332 1336 aaKnown RBP11.41□□□□□ -0.58
KRR1YCL059C TY1B-HO13535 1793 aa11.37□□□□□ -0.59
KRR1YCL059C TY1B-DR5P0C2I2 1755 aa11.37□□□□□ -0.59
KRR1YCL059C TY1B-DR6P0C2I3 1755 aa11.37□□□□□ -0.59
KRR1YCL059C TY1B-LR2P0C2I5 1755 aa11.37□□□□□ -0.59
KRR1YCL059C TY1B-LR3P0C2I6 1755 aaKnown RBP11.37□□□□□ -0.59
KRR1YCL059C TY1B-PR1P0C2I9 1755 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms