RNA–Protein interactions for RNA: YAR007C

RFA1, Transcript of Subunit of heterotrimeric Replication Protein A (RPA), yeastyeast

Gene RFA1, Length 1,866 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RFA1YAR007C MTC1P47018 478 aaKnown RBP11.42□□□□□ -0.58
RFA1YAR007C DRS1P32892 752 aaKnown RBP10.57□□□□□ -0.72
RFA1YAR007C FAP1P53971 965 aa10.39□□□□□ -0.75
RFA1YAR007C PRY3P47033 881 aa9.78□□□□□ -0.84
RFA1YAR007C PRI1P10363 409 aa9.7□□□□□ -0.86
RFA1YAR007C AAD16Q02895 342 aa9.64□□□□□ -0.87
RFA1YAR007C ISW2Q08773 1120 aa9.47□□□□□ -0.89
RFA1YAR007C RPG1P38249 964 aaKnown RBP9.41□□□□□ -0.9
RFA1YAR007C DIP2Q12220 943 aaPredicted RBP9.32□□□□□ -0.92
RFA1YAR007C YCK3P39962 524 aa9.28□□□□□ -0.92
RFA1YAR007C TSR3Q12094 313 aaKnown RBP9.18□□□□□ -0.94
RFA1YAR007C HAA1Q12753 694 aaKnown RBP9.14□□□□□ -0.95
RFA1YAR007C RSE1Q04693 1361 aaKnown RBP9.01□□□□□ -0.97
RFA1YAR007C AVT3P36062 692 aa8.96□□□□□ -0.97
RFA1YAR007C MRPL32P25348 183 aa8.78□□□□□ -1
RFA1YAR007C RPL17AP05740 184 aaKnown RBP8.74□□□□□ -1.01
RFA1YAR007C RPL17BP46990 184 aaKnown RBP8.74□□□□□ -1.01
RFA1YAR007C BFR2Q06631 534 aaKnown RBP8.72□□□□□ -1.01
RFA1YAR007C REB1P21538 810 aa8.7□□□□□ -1.02
RFA1YAR007C SGS1P35187 1447 aa8.63□□□□□ -1.03
RFA1YAR007C SPA2P23201 1466 aaKnown RBP8.62□□□□□ -1.03
RFA1YAR007C SSN2P38931 1420 aa8.5□□□□□ -1.05
RFA1YAR007C YGL015CP33199 130 aa8.45□□□□□ -1.06
RFA1YAR007C SPT21P35209 758 aa8.37□□□□□ -1.07
RFA1YAR007C CDC27P38042 758 aa8.36□□□□□ -1.07
RFA1YAR007C YKR023WP36119 530 aaKnown RBP8.32□□□□□ -1.08
RFA1YAR007C INO80P53115 1489 aa8.27□□□□□ -1.09
RFA1YAR007C HOP09932 586 aa8.15□□□□□ -1.1
RFA1YAR007C SKI3P17883 1432 aaKnown RBP8.14□□□□□ -1.11
RFA1YAR007C DCD1P06773 312 aa8.13□□□□□ -1.11
RFA1YAR007C TFC8Q12308 588 aa8.13□□□□□ -1.11
RFA1YAR007C MAP2P38174 421 aaKnown RBP8.11□□□□□ -1.11
RFA1YAR007C UBP10P53874 792 aaPredicted RBP8.09□□□□□ -1.12
RFA1YAR007C RIM101P33400 625 aa8.06□□□□□ -1.12
RFA1YAR007C TCB3Q03640 1545 aaKnown RBP7.98□□□□□ -1.13
RFA1YAR007C NOP2P40991 618 aaKnown RBP7.92□□□□□ -1.14
RFA1YAR007C SCY1P53009 804 aa7.92□□□□□ -1.14
RFA1YAR007C TY1B-DR4Q07793 1604 aa7.88□□□□□ -1.15
RFA1YAR007C BCH2P36122 765 aa7.87□□□□□ -1.15
RFA1YAR007C MMS22Q06164 1454 aa7.87□□□□□ -1.15
RFA1YAR007C NSR1P27476 414 aaKnown RBP RIP-Chip data7.86□□□□□ -1.15not detected
RFA1YAR007C CHD1P32657 1468 aa7.85□□□□□ -1.15
RFA1YAR007C HSL1P34244 1518 aa7.85□□□□□ -1.15
RFA1YAR007C OXP1P28273 1286 aa7.81□□□□□ -1.16
RFA1YAR007C SLX5P32828 619 aaKnown RBP7.8□□□□□ -1.16
RFA1YAR007C SPT6P23615 1451 aaKnown RBP7.79□□□□□ -1.16
RFA1YAR007C BUD31P25337 157 aaPredicted RBP7.79□□□□□ -1.16
RFA1YAR007C XRN1P22147 1528 aaKnown RBP7.77□□□□□ -1.17
RFA1YAR007C TIF4632P39936 914 aaKnown RBP7.75□□□□□ -1.17
RFA1YAR007C HIR3P47171 1648 aa7.74□□□□□ -1.17
RFA1YAR007C TGL3P40308 642 aa7.74□□□□□ -1.17
RFA1YAR007C UFD4P33202 1483 aa7.71□□□□□ -1.18
RFA1YAR007C THO2P53552 1597 aaKnown RBP7.7□□□□□ -1.18
RFA1YAR007C REV3P14284 1504 aa7.69□□□□□ -1.18
RFA1YAR007C EPS1P40557 701 aa7.66□□□□□ -1.18
RFA1YAR007C PTP3P40048 928 aa7.65□□□□□ -1.18
RFA1YAR007C YIL055CP40523 627 aaKnown RBP7.65□□□□□ -1.18
RFA1YAR007C SIN3P22579 1536 aa7.65□□□□□ -1.19
RFA1YAR007C SSK2P53599 1579 aa7.65□□□□□ -1.19
RFA1YAR007C BDF1P35817 686 aa7.64□□□□□ -1.19
RFA1YAR007C TRM732Q03496 1420 aa7.63□□□□□ -1.19
RFA1YAR007C TAF2P23255 1407 aa7.61□□□□□ -1.19
RFA1YAR007C STU1P38198 1513 aa7.6□□□□□ -1.19
RFA1YAR007C TFA1P36100 482 aa7.6□□□□□ -1.19
RFA1YAR007C MYO2P19524 1574 aaKnown RBP7.59□□□□□ -1.19
RFA1YAR007C SAS10Q12136 610 aaPredicted RBP7.59□□□□□ -1.19
RFA1YAR007C ESP1Q03018 1630 aa7.57□□□□□ -1.2
RFA1YAR007C IKI3Q06706 1349 aaKnown RBP7.56□□□□□ -1.2
RFA1YAR007C MON2P48563 1636 aaPredicted RBP7.55□□□□□ -1.2
RFA1YAR007C RSM7P47150 247 aa7.55□□□□□ -1.2
RFA1YAR007C BPT1P14772 1559 aa7.55□□□□□ -1.2
RFA1YAR007C POL1P13382 1468 aa7.54□□□□□ -1.2
RFA1YAR007C YAH1Q12184 172 aaKnown RBP7.54□□□□□ -1.2
RFA1YAR007C SPP41P38904 1435 aa7.54□□□□□ -1.2
RFA1YAR007C YTA7P40340 1379 aa7.53□□□□□ -1.2
RFA1YAR007C ENP1P38333 483 aaKnown RBP7.51□□□□□ -1.21
RFA1YAR007C UBP9P39967 754 aa7.5□□□□□ -1.21
RFA1YAR007C SCC2Q04002 1493 aa7.5□□□□□ -1.21
RFA1YAR007C AI2P03876 854 aa7.49□□□□□ -1.21
RFA1YAR007C BBC1P47068 1157 aa7.47□□□□□ -1.21
RFA1YAR007C SSM4P40318 1319 aa7.47□□□□□ -1.21
RFA1YAR007C SWR1Q05471 1514 aa7.47□□□□□ -1.21
RFA1YAR007C NUP170P38181 1502 aa7.45□□□□□ -1.22
RFA1YAR007C POL5P39985 1022 aaKnown RBP7.44□□□□□ -1.22
RFA1YAR007C YLR271WQ06152 274 aa7.43□□□□□ -1.22
RFA1YAR007C ECM5Q03214 1411 aa7.42□□□□□ -1.22
RFA1YAR007C MST1P07236 462 aa7.41□□□□□ -1.22
RFA1YAR007C STH1P32597 1359 aa7.4□□□□□ -1.22
RFA1YAR007C DNA2P38859 1522 aa7.4□□□□□ -1.22
RFA1YAR007C MYO4P32492 1471 aa7.4□□□□□ -1.22
RFA1YAR007C SIS1P25294 352 aaKnown RBP7.4□□□□□ -1.23
RFA1YAR007C RKR1Q04781 1562 aa7.4□□□□□ -1.23
RFA1YAR007C SPT7P35177 1332 aa7.39□□□□□ -1.23
RFA1YAR007C YOR1P53049 1477 aa7.39□□□□□ -1.23
RFA1YAR007C YPK9Q12697 1472 aa7.39□□□□□ -1.23
RFA1YAR007C YOR238WQ08634 303 aa7.37□□□□□ -1.23
RFA1YAR007C SNQ2P32568 1501 aaKnown RBP7.35□□□□□ -1.23
RFA1YAR007C BUD4P47136 1447 aa7.35□□□□□ -1.23
RFA1YAR007C ATG2P53855 1592 aa7.34□□□□□ -1.23
RFA1YAR007C MLP2P40457 1679 aa7.34□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms