RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 NCOA2Q15596 1464 aa28.28■■■□□ 2.12
SHKBP1-227ENST00000602011 FBXO31Q5XUX0 539 aaPredicted RBP28.28■■■□□ 2.12
SHKBP1-227ENST00000602011 CCDC141Q6ZP82 1450 aa28.27■■■□□ 2.12
SHKBP1-227ENST00000602011 KIF3BO15066 747 aa28.26■■■□□ 2.11
SHKBP1-227ENST00000602011 A2ML1A8K2U0 1454 aa28.25■■■□□ 2.11
SHKBP1-227ENST00000602011 DNMT1P26358 1616 aaKnown RBP28.25■■■□□ 2.11
SHKBP1-227ENST00000602011 FAM135AQ9P2D6 1515 aa28.23■■■□□ 2.11
SHKBP1-227ENST00000602011 WASHC2CQ9Y4E1 1318 aa28.2■■■□□ 2.11
SHKBP1-227ENST00000602011 VPS8Q8N3P4 1428 aa28.2■■■□□ 2.11
SHKBP1-227ENST00000602011 TNRQ92752 1358 aa28.2■■■□□ 2.1
SHKBP1-227ENST00000602011 CAMSAP2Q08AD1 1489 aa28.2■■■□□ 2.1
SHKBP1-227ENST00000602011 NEURL4Q96JN8 1562 aa28.16■■■□□ 2.1
SHKBP1-227ENST00000602011 LRRC9Q6ZRR7 1453 aa28.15■■■□□ 2.1
SHKBP1-227ENST00000602011 KDM5DQ9BY66 1539 aa28.15■■■□□ 2.1
SHKBP1-227ENST00000602011 ARHGEF5Q12774 1597 aa28.15■■■□□ 2.1
SHKBP1-227ENST00000602011 PZPP20742 1482 aa28.15■■■□□ 2.1
SHKBP1-227ENST00000602011 MAP3K1Q13233 1512 aa28.14■■■□□ 2.1
SHKBP1-227ENST00000602011 LOC105371045A0A1W2PR82 267 aa28.13■■■□□ 2.09
SHKBP1-227ENST00000602011 SCAF1Q9H7N4 1312 aaKnown RBP28.12■■■□□ 2.09
SHKBP1-227ENST00000602011 POLR1AO95602 1720 aaPredicted RBP28.12■■■□□ 2.09
SHKBP1-227ENST00000602011 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.11■■■□□ 2.09
SHKBP1-227ENST00000602011 THEMISQ8N1K5 641 aaPredicted RBP28.11■■■□□ 2.09
SHKBP1-227ENST00000602011 MIA2Q96PC5 1412 aa28.1■■■□□ 2.09
SHKBP1-227ENST00000602011 PIP4K2BP78356 416 aa28.1■■■□□ 2.09
SHKBP1-227ENST00000602011 HSPA1LP34931 641 aa28.06■■■□□ 2.08
SHKBP1-227ENST00000602011 ANKLE2Q86XL3 938 aa28.06■■■□□ 2.08
SHKBP1-227ENST00000602011 SHANK2Q9UPX8 1470 aa28.06■■■□□ 2.08
SHKBP1-227ENST00000602011 NLRP1Q9C000 1473 aa28.03■■■□□ 2.08
SHKBP1-227ENST00000602011 APLP2Q06481 763 aa28.03■■■□□ 2.08
SHKBP1-227ENST00000602011 KANK4Q5T7N3 995 aaPredicted RBP28.03■■■□□ 2.08
SHKBP1-227ENST00000602011 MYOM3Q5VTT5 1437 aa28.02■■■□□ 2.08
SHKBP1-227ENST00000602011 CPS1P31327 1500 aa28.02■■■□□ 2.08
SHKBP1-227ENST00000602011 VWDEQ8N2E2 1590 aa28.01■■■□□ 2.07
SHKBP1-227ENST00000602011 UGGT1Q9NYU2 1555 aa28.01■■■□□ 2.07
SHKBP1-227ENST00000602011 MAST1Q9Y2H9 1570 aa28■■■□□ 2.07
SHKBP1-227ENST00000602011 NPHP4O75161 1426 aaPredicted RBP27.99■■■□□ 2.07
SHKBP1-227ENST00000602011 TOM1O60784 492 aa27.97■■■□□ 2.07
SHKBP1-227ENST00000602011 ABCC3O15438 1527 aa27.96■■■□□ 2.07
SHKBP1-227ENST00000602011 RNF17Q9BXT8 1623 aaKnown RBP27.94■■■□□ 2.06
SHKBP1-227ENST00000602011 MED14O60244 1454 aa27.93■■■□□ 2.06
SHKBP1-227ENST00000602011 MED1Q15648 1581 aaPredicted RBP27.93■■■□□ 2.06
SHKBP1-227ENST00000602011 SENP3Q9H4L4 574 aaPredicted RBP27.92■■■□□ 2.06
SHKBP1-227ENST00000602011 DEPDC5O75140 1603 aa27.92■■■□□ 2.06
SHKBP1-227ENST00000602011 ALKQ9UM73 1620 aa27.92■■■□□ 2.06
SHKBP1-227ENST00000602011 IQGAP1P46940 1657 aa27.9■■■□□ 2.06
SHKBP1-227ENST00000602011 ERVK-7P63135 1459 aa27.89■■■□□ 2.06
SHKBP1-227ENST00000602011 MROH1Q8NDA8 1641 aa27.89■■■□□ 2.06
SHKBP1-227ENST00000602011 EIF2AK4Q9P2K8 1649 aaKnown RBP27.89■■■□□ 2.06
SHKBP1-227ENST00000602011 STRCP1A6NGW2 1772 aa27.89■■■□□ 2.06
SHKBP1-227ENST00000602011 DUOX2Q9NRD8 1548 aa27.88■■■□□ 2.05
SHKBP1-227ENST00000602011 CFAP65Q6ZU64 1925 aaKnown RBP27.88■■■□□ 2.05
SHKBP1-227ENST00000602011 CEP152O94986 1710 aa27.87■■■□□ 2.05
SHKBP1-227ENST00000602011 ZC3H13Q5T200 1668 aaKnown RBP27.86■■■□□ 2.05
SHKBP1-227ENST00000602011 KIF15Q9NS87 1388 aa27.83■■■□□ 2.05
SHKBP1-227ENST00000602011 LRRC7Q96NW7 1537 aa27.82■■■□□ 2.04
SHKBP1-227ENST00000602011 ARHGAP31Q2M1Z3 1444 aa27.82■■■□□ 2.04
SHKBP1-227ENST00000602011 ERBINQ96RT1 1412 aa27.82■■■□□ 2.04
SHKBP1-227ENST00000602011 ABCC5O15440 1437 aa27.81■■■□□ 2.04
SHKBP1-227ENST00000602011 RRP7BPQ9NSQ0 103 aa27.8■■■□□ 2.04
SHKBP1-227ENST00000602011 UBR1Q8IWV7 1749 aa27.79■■■□□ 2.04
SHKBP1-227ENST00000602011 KANK1Q14678 1352 aa27.78■■■□□ 2.04
SHKBP1-227ENST00000602011 LTKP29376 864 aa27.77■■■□□ 2.04
SHKBP1-227ENST00000602011 SCAF11Q99590 1463 aaKnown RBP27.75■■■□□ 2.03
SHKBP1-227ENST00000602011 ANKRD30AQ9BXX3 1397 aa27.74■■■□□ 2.03
SHKBP1-227ENST00000602011 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.73■■■□□ 2.03
SHKBP1-227ENST00000602011 PHF23Q9BUL5 403 aaPredicted RBP27.73■■■□□ 2.03
SHKBP1-227ENST00000602011 EID1Q9Y6B2 187 aa27.73■■■□□ 2.03
SHKBP1-227ENST00000602011 DAPK1P53355 1430 aa27.73■■■□□ 2.03
SHKBP1-227ENST00000602011 FGD6Q6ZV73 1430 aa27.73■■■□□ 2.03
SHKBP1-227ENST00000602011 PTPN23Q9H3S7 1636 aa27.72■■■□□ 2.03
SHKBP1-227ENST00000602011 TXNDC2Q86VQ3 553 aa27.72■■■□□ 2.03
SHKBP1-227ENST00000602011 SYNMO15061 1565 aa27.72■■■□□ 2.03
SHKBP1-227ENST00000602011 PRDM15P57071 1507 aaPredicted RBP27.7■■■□□ 2.02
SHKBP1-227ENST00000602011 ARHGAP23Q9P227 1491 aa27.7■■■□□ 2.02
SHKBP1-227ENST00000602011 SLIT1O75093 1534 aa27.67■■■□□ 2.02
SHKBP1-227ENST00000602011 CROCC2H7BZ55 1655 aa27.67■■■□□ 2.02
SHKBP1-227ENST00000602011 STAG3Q9UJ98 1225 aa27.66■■■□□ 2.02
SHKBP1-227ENST00000602011 PIK3C2BO00750 1634 aa27.65■■■□□ 2.02
SHKBP1-227ENST00000602011 CHIC2Q9UKJ5 165 aa27.64■■■□□ 2.02
SHKBP1-227ENST00000602011 XIRP1Q702N8 1843 aaKnown RBP27.63■■■□□ 2.01
SHKBP1-227ENST00000602011 LMTK2Q8IWU2 1503 aa27.62■■■□□ 2.01
SHKBP1-227ENST00000602011 SLC52A1Q9NWF4 448 aa27.61■■■□□ 2.01
SHKBP1-227ENST00000602011 TMEM2Q9UHN6 1383 aa27.6■■■□□ 2.01
SHKBP1-227ENST00000602011 IDI1Q13907 227 aa27.59■■■□□ 2.01
SHKBP1-227ENST00000602011 RBM33Q96EV2 1170 aaKnown RBP27.56■■■□□ 2
SHKBP1-227ENST00000602011 ADGRL2O95490 1459 aa27.55■■■□□ 2
SHKBP1-227ENST00000602011 FAM50AQ14320 339 aaKnown RBP27.54■■■□□ 2
SHKBP1-227ENST00000602011 RGS17Q9UGC6 210 aaPredicted RBP27.54■■■□□ 2
SHKBP1-227ENST00000602011 SLC26A8Q96RN1 970 aa27.53■■■□□ 2
SHKBP1-227ENST00000602011 EFCAB6Q5THR3 1501 aa27.52■■■□□ 2
SHKBP1-227ENST00000602011 HDGFP51858 240 aaKnown RBP27.52■■■□□ 2
SHKBP1-227ENST00000602011 TMEM94Q12767 1356 aa27.51■■□□□ 1.99
SHKBP1-227ENST00000602011 NOS1P29475 1434 aa27.5■■□□□ 1.99
SHKBP1-227ENST00000602011 KDM5AP29375 1690 aaKnown RBP27.5■■□□□ 1.99
SHKBP1-227ENST00000602011 ANKRD50Q9ULJ7 1429 aa27.5■■□□□ 1.99
SHKBP1-227ENST00000602011 KCNA6P17658 529 aa27.48■■□□□ 1.99
SHKBP1-227ENST00000602011 RPRD2Q5VT52 1461 aaKnown RBP27.47■■□□□ 1.99
SHKBP1-227ENST00000602011 TET3O43151 1660 aa27.46■■□□□ 1.99
SHKBP1-227ENST00000602011 PROSER2Q86WR7 435 aaPredicted RBP27.45■■□□□ 1.98
SHKBP1-227ENST00000602011 FAM135BQ49AJ0 1406 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms