RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 NISCHQ9Y2I1 1504 aa44.47■■■■■ 4.71
SHKBP1-227ENST00000602011 ABCC9O60706 1549 aa40.43■■■■■ 4.06
SHKBP1-227ENST00000602011 CCDC180Q9P1Z9 1646 aa39.94■■■■□ 3.99
SHKBP1-227ENST00000602011 DNAJC5BQ9UF47 199 aa38.25■■■■□ 3.71
SHKBP1-227ENST00000602011 RB1CC1Q8TDY2 1594 aa38.2■■■■□ 3.71
SHKBP1-227ENST00000602011 NACADO15069 1562 aa37.85■■■■□ 3.65
SHKBP1-227ENST00000602011 DCAF8L2P0C7V8 631 aa37.81■■■■□ 3.64
SHKBP1-227ENST00000602011 PABPN1Q86U42 306 aaKnown RBP eCLIP37.65■■■■□ 3.62
SHKBP1-227ENST00000602011 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
SHKBP1-227ENST00000602011 MYO15BQ96JP2 1530 aa37.35■■■■□ 3.57
SHKBP1-227ENST00000602011 BICRAQ9NZM4 1560 aa37.19■■■■□ 3.54
SHKBP1-227ENST00000602011 DCAF1Q9Y4B6 1507 aa36.81■■■■□ 3.48
SHKBP1-227ENST00000602011 ZCCHC6Q5VYS8 1495 aaKnown RBP36.79■■■■□ 3.48
SHKBP1-227ENST00000602011 SCRIBQ14160 1630 aa36.55■■■■□ 3.44
SHKBP1-227ENST00000602011 SHROOM4Q9ULL8 1493 aa36.54■■■■□ 3.44
SHKBP1-227ENST00000602011 CC2D2AQ9P2K1 1620 aa36.45■■■■□ 3.42
SHKBP1-227ENST00000602011 CECR2Q9BXF3 1484 aa36.39■■■■□ 3.42
SHKBP1-227ENST00000602011 EIF4G1Q04637 1599 aaKnown RBP36.27■■■■□ 3.4
SHKBP1-227ENST00000602011 DNAJC5Q9H3Z4 198 aa35.21■■■■□ 3.23
SHKBP1-227ENST00000602011 NCAPD3P42695 1498 aa34.97■■■■□ 3.19
SHKBP1-227ENST00000602011 ATAD2BQ9ULI0 1458 aa34.88■■■■□ 3.17
SHKBP1-227ENST00000602011 ERCC6Q03468 1493 aa34.86■■■■□ 3.17
SHKBP1-227ENST00000602011 CUX2O14529 1486 aa34.82■■■■□ 3.16
SHKBP1-227ENST00000602011 SMARCA4P51532 1647 aa34.76■■■■□ 3.15
SHKBP1-227ENST00000602011 SMARCA2P51531 1590 aa34.7■■■■□ 3.14
SHKBP1-227ENST00000602011 NESP48681 1621 aa34.67■■■■□ 3.14
SHKBP1-227ENST00000602011 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
SHKBP1-227ENST00000602011 BAZ1AQ9NRL2 1556 aaPredicted RBP34.53■■■■□ 3.12
SHKBP1-227ENST00000602011 BAZ1BQ9UIG0 1483 aaKnown RBP34.52■■■■□ 3.12
SHKBP1-227ENST00000602011 PEG3Q9GZU2 1588 aa34.35■■■■□ 3.09
SHKBP1-227ENST00000602011 MROH2BQ7Z745 1585 aa34.33■■■■□ 3.09
SHKBP1-227ENST00000602011 THOC2Q8NI27 1593 aaKnown RBP34.28■■■■□ 3.08
SHKBP1-227ENST00000602011 LAMC3Q9Y6N6 1575 aa34.21■■■■□ 3.07
SHKBP1-227ENST00000602011 KIF21AQ7Z4S6 1674 aa34.15■■■■□ 3.06
SHKBP1-227ENST00000602011 PDS5BQ9NTI5 1447 aa34.04■■■■□ 3.04
SHKBP1-227ENST00000602011 CADPSQ9ULU8 1353 aa33.93■■■■□ 3.02
SHKBP1-227ENST00000602011 WIZO95785 1651 aa33.91■■■■□ 3.02
SHKBP1-227ENST00000602011 MRC2Q9UBG0 1479 aa33.81■■■■□ 3
SHKBP1-227ENST00000602011 WDR62O43379 1518 aa33.72■■■□□ 2.99
SHKBP1-227ENST00000602011 TRIM41Q8WV44 630 aa33.68■■■□□ 2.98
SHKBP1-227ENST00000602011 CEP164Q9UPV0 1460 aa33.62■■■□□ 2.97
SHKBP1-227ENST00000602011 FANCD2Q9BXW9 1451 aa33.57■■■□□ 2.97
SHKBP1-227ENST00000602011 RSF1Q96T23 1441 aaPredicted RBP33.53■■■□□ 2.96
SHKBP1-227ENST00000602011 CFTRP13569 1480 aa33.47■■■□□ 2.95
SHKBP1-227ENST00000602011 TOP2AP11388 1531 aaKnown RBP33.38■■■□□ 2.93
SHKBP1-227ENST00000602011 URB2Q14146 1524 aaKnown RBP33.35■■■□□ 2.93
SHKBP1-227ENST00000602011 OSCARQ8IYS5 282 aa33.23■■■□□ 2.91
SHKBP1-227ENST00000602011 CCDC88BA6NC98 1476 aa33.06■■■□□ 2.88
SHKBP1-227ENST00000602011 PRDM2Q13029 1718 aa33.05■■■□□ 2.88
SHKBP1-227ENST00000602011 ZNF608Q9ULD9 1512 aaPredicted RBP33.02■■■□□ 2.88
SHKBP1-227ENST00000602011 IFT140Q96RY7 1462 aa32.93■■■□□ 2.86
SHKBP1-227ENST00000602011 TOPBP1Q92547 1522 aa32.91■■■□□ 2.86
SHKBP1-227ENST00000602011 RIMBP3CA6NJZ7 1639 aa32.88■■■□□ 2.85
SHKBP1-227ENST00000602011 RIMBP3BA6NNM3 1639 aa32.88■■■□□ 2.85
SHKBP1-227ENST00000602011 RIMBP3Q9UFD9 1639 aa32.88■■■□□ 2.85
SHKBP1-227ENST00000602011 ABCC8Q09428 1581 aa32.85■■■□□ 2.85
SHKBP1-227ENST00000602011 EIF4G3O43432 1585 aaKnown RBP32.76■■■□□ 2.84
SHKBP1-227ENST00000602011 ARHGEF11O15085 1522 aa32.73■■■□□ 2.83
SHKBP1-227ENST00000602011 DNMBPQ6XZF7 1577 aa32.72■■■□□ 2.83
SHKBP1-227ENST00000602011 AQRO60306 1485 aaKnown RBP eCLIP32.68■■■□□ 2.82
SHKBP1-227ENST00000602011 TARBP1Q13395 1621 aaKnown RBP32.62■■■□□ 2.81
SHKBP1-227ENST00000602011 CHD1O14646 1710 aa32.59■■■□□ 2.81
SHKBP1-227ENST00000602011 CYB5RLQ6IPT4 315 aa32.57■■■□□ 2.8
SHKBP1-227ENST00000602011 POLA1P09884 1462 aaPredicted RBP32.55■■■□□ 2.8
SHKBP1-227ENST00000602011 FBLN2P98095 1184 aa32.54■■■□□ 2.8
SHKBP1-227ENST00000602011 RAD54L2Q9Y4B4 1467 aa32.51■■■□□ 2.79
SHKBP1-227ENST00000602011 TDRD9Q8NDG6 1382 aaKnown RBP32.44■■■□□ 2.78
SHKBP1-227ENST00000602011 ARAP1Q96P48 1450 aa32.42■■■□□ 2.78
SHKBP1-227ENST00000602011 SOGA1O94964 1423 aa32.4■■■□□ 2.78
SHKBP1-227ENST00000602011 FGD5Q6ZNL6 1462 aa32.33■■■□□ 2.77
SHKBP1-227ENST00000602011 SNAPC4Q5SXM2 1469 aa32.31■■■□□ 2.76
SHKBP1-227ENST00000602011 TRHP20396 242 aaPredicted RBP32.3■■■□□ 2.76
SHKBP1-227ENST00000602011 CUX1P39880 1505 aa32.26■■■□□ 2.76
SHKBP1-227ENST00000602011 WDR97A6NE52 1622 aa32.21■■■□□ 2.75
SHKBP1-227ENST00000602011 CHMP7Q8WUX9 453 aaPredicted RBP32.18■■■□□ 2.74
SHKBP1-227ENST00000602011 CLASP1Q7Z460 1538 aa32.17■■■□□ 2.74
SHKBP1-227ENST00000602011 GRIN2BQ13224 1484 aa32.11■■■□□ 2.73
SHKBP1-227ENST00000602011 MAGI1Q96QZ7 1491 aaPredicted RBP32.11■■■□□ 2.73
SHKBP1-227ENST00000602011 SYNJ1O43426 1573 aa32.09■■■□□ 2.73
SHKBP1-227ENST00000602011 SYNJ2O15056 1496 aa32.04■■■□□ 2.72
SHKBP1-227ENST00000602011 SUPT5HO00267 1087 aaKnown RBP32.02■■■□□ 2.72
SHKBP1-227ENST00000602011 PBRM1Q86U86 1689 aa31.99■■■□□ 2.71
SHKBP1-227ENST00000602011 GAPVD1Q14C86 1478 aa31.99■■■□□ 2.71
SHKBP1-227ENST00000602011 ABCA10Q8WWZ4 1543 aa31.88■■■□□ 2.69
SHKBP1-227ENST00000602011 ABCA5Q8WWZ7 1642 aa31.88■■■□□ 2.69
SHKBP1-227ENST00000602011 WRNQ14191 1432 aaPredicted RBP eCLIP31.81■■■□□ 2.68
SHKBP1-227ENST00000602011 ERCC6L2Q5T890 1561 aa31.77■■■□□ 2.68
SHKBP1-227ENST00000602011 GRIN2AQ12879 1464 aa31.72■■■□□ 2.67
SHKBP1-227ENST00000602011 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
SHKBP1-227ENST00000602011 CEP170Q5SW79 1584 aa31.67■■■□□ 2.66
SHKBP1-227ENST00000602011 NUP160Q12769 1436 aa31.62■■■□□ 2.65
SHKBP1-227ENST00000602011 TOP2BQ02880 1626 aa31.61■■■□□ 2.65
SHKBP1-227ENST00000602011 BIVM-ERCC5R4GMW8 1640 aa31.6■■■□□ 2.65
SHKBP1-227ENST00000602011 FHAD1B1AJZ9 1412 aa31.55■■■□□ 2.64
SHKBP1-227ENST00000602011 AEBP2Q6ZN18 517 aaPredicted RBP31.53■■■□□ 2.64
SHKBP1-227ENST00000602011 SHROOM2Q13796 1616 aa31.49■■■□□ 2.63
SHKBP1-227ENST00000602011 ERICH3Q5RHP9 1530 aa31.48■■■□□ 2.63
SHKBP1-227ENST00000602011 PRG4Q92954 1404 aaPredicted RBP31.38■■■□□ 2.61
SHKBP1-227ENST00000602011 JPH4Q96JJ6 628 aa31.32■■■□□ 2.6
SHKBP1-227ENST00000602011 KIF13AQ9H1H9 1805 aa31.27■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms