RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 KDM5DQ9BY66 1539 aa28.49■■■□□ 2.15
NUP50-218ENST00000493456 CCDC141Q6ZP82 1450 aa28.49■■■□□ 2.15
NUP50-218ENST00000493456 POLR1AO95602 1720 aaPredicted RBP28.49■■■□□ 2.15
NUP50-218ENST00000493456 PZPP20742 1482 aa28.48■■■□□ 2.15
NUP50-218ENST00000493456 TNRQ92752 1358 aa28.48■■■□□ 2.15
NUP50-218ENST00000493456 CPS1P31327 1500 aa28.46■■■□□ 2.15
NUP50-218ENST00000493456 NEURL4Q96JN8 1562 aa28.45■■■□□ 2.14
NUP50-218ENST00000493456 KIF3BO15066 747 aa28.44■■■□□ 2.14
NUP50-218ENST00000493456 RSPH4AQ5TD94 716 aa28.43■■■□□ 2.14
NUP50-218ENST00000493456 CAMSAP2Q08AD1 1489 aa28.42■■■□□ 2.14
NUP50-218ENST00000493456 FBXO31Q5XUX0 539 aaPredicted RBP28.4■■■□□ 2.14
NUP50-218ENST00000493456 NCOA2Q15596 1464 aa28.4■■■□□ 2.14
NUP50-218ENST00000493456 SHANK2Q9UPX8 1470 aa28.4■■■□□ 2.14
NUP50-218ENST00000493456 NLRP1Q9C000 1473 aa28.39■■■□□ 2.13
NUP50-218ENST00000493456 WASHC2CQ9Y4E1 1318 aa28.39■■■□□ 2.13
NUP50-218ENST00000493456 TOM1O60784 492 aa28.36■■■□□ 2.13
NUP50-218ENST00000493456 ANKLE2Q86XL3 938 aa28.36■■■□□ 2.13
NUP50-218ENST00000493456 ARHGEF5Q12774 1597 aa28.36■■■□□ 2.13
NUP50-218ENST00000493456 MIA2Q96PC5 1412 aa28.35■■■□□ 2.13
NUP50-218ENST00000493456 UGGT1Q9NYU2 1555 aa28.34■■■□□ 2.13
NUP50-218ENST00000493456 DEPDC5O75140 1603 aa28.34■■■□□ 2.13
NUP50-218ENST00000493456 THEMISQ8N1K5 641 aaPredicted RBP28.34■■■□□ 2.13
NUP50-218ENST00000493456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.34■■■□□ 2.13
NUP50-218ENST00000493456 SCAF1Q9H7N4 1312 aaKnown RBP28.33■■■□□ 2.13
NUP50-218ENST00000493456 MED14O60244 1454 aa28.33■■■□□ 2.13
NUP50-218ENST00000493456 VWDEQ8N2E2 1590 aa28.32■■■□□ 2.12
NUP50-218ENST00000493456 HSPA1LP34931 641 aa28.31■■■□□ 2.12
NUP50-218ENST00000493456 MED1Q15648 1581 aaPredicted RBP28.3■■■□□ 2.12
NUP50-218ENST00000493456 PIP4K2BP78356 416 aa28.3■■■□□ 2.12
NUP50-218ENST00000493456 NPHP4O75161 1426 aaPredicted RBP28.29■■■□□ 2.12
NUP50-218ENST00000493456 TSPY4P0CV99 314 aa28.29■■■□□ 2.12
NUP50-218ENST00000493456 TSPY10P0CW01 314 aa28.29■■■□□ 2.12
NUP50-218ENST00000493456 RNF17Q9BXT8 1623 aaKnown RBP28.28■■■□□ 2.12
NUP50-218ENST00000493456 ZC3H13Q5T200 1668 aaKnown RBP28.27■■■□□ 2.12
NUP50-218ENST00000493456 IQGAP1P46940 1657 aa28.25■■■□□ 2.11
NUP50-218ENST00000493456 MAST1Q9Y2H9 1570 aa28.24■■■□□ 2.11
NUP50-218ENST00000493456 ABCC3O15438 1527 aa28.23■■■□□ 2.11
NUP50-218ENST00000493456 EIF2AK4Q9P2K8 1649 aaKnown RBP28.21■■■□□ 2.11
NUP50-218ENST00000493456 ALKQ9UM73 1620 aa28.18■■■□□ 2.1
NUP50-218ENST00000493456 SYNMO15061 1565 aa28.17■■■□□ 2.1
NUP50-218ENST00000493456 ERVK-7P63135 1459 aa28.17■■■□□ 2.1
NUP50-218ENST00000493456 LRRC9Q6ZRR7 1453 aa28.17■■■□□ 2.1
NUP50-218ENST00000493456 MROH1Q8NDA8 1641 aa28.13■■■□□ 2.09
NUP50-218ENST00000493456 LRRC7Q96NW7 1537 aa28.13■■■□□ 2.09
NUP50-218ENST00000493456 STRCP1A6NGW2 1772 aa28.11■■■□□ 2.09
NUP50-218ENST00000493456 VPS8Q8N3P4 1428 aa28.1■■■□□ 2.09
NUP50-218ENST00000493456 UBR1Q8IWV7 1749 aa28.09■■■□□ 2.09
NUP50-218ENST00000493456 PHF23Q9BUL5 403 aaPredicted RBP28.08■■■□□ 2.09
NUP50-218ENST00000493456 DUOX2Q9NRD8 1548 aa28.08■■■□□ 2.08
NUP50-218ENST00000493456 CEP152O94986 1710 aa28.07■■■□□ 2.08
NUP50-218ENST00000493456 SCAF11Q99590 1463 aaKnown RBP28.07■■■□□ 2.08
NUP50-218ENST00000493456 MAP3K1Q13233 1512 aa28.06■■■□□ 2.08
NUP50-218ENST00000493456 MYOM3Q5VTT5 1437 aa28.05■■■□□ 2.08
NUP50-218ENST00000493456 SLIT1O75093 1534 aa28.02■■■□□ 2.08
NUP50-218ENST00000493456 ARHGAP23Q9P227 1491 aa28.02■■■□□ 2.08
NUP50-218ENST00000493456 ARHGAP31Q2M1Z3 1444 aa28.02■■■□□ 2.08
NUP50-218ENST00000493456 PRDM15P57071 1507 aaPredicted RBP28.02■■■□□ 2.08
NUP50-218ENST00000493456 ERBINQ96RT1 1412 aa27.98■■■□□ 2.07
NUP50-218ENST00000493456 KIF15Q9NS87 1388 aa27.97■■■□□ 2.07
NUP50-218ENST00000493456 CFAP65Q6ZU64 1925 aaKnown RBP27.95■■■□□ 2.06
NUP50-218ENST00000493456 KANK4Q5T7N3 995 aaPredicted RBP27.95■■■□□ 2.06
NUP50-218ENST00000493456 TXNDC2Q86VQ3 553 aa27.95■■■□□ 2.06
NUP50-218ENST00000493456 LTKP29376 864 aa27.94■■■□□ 2.06
NUP50-218ENST00000493456 CROCC2H7BZ55 1655 aa27.94■■■□□ 2.06
NUP50-218ENST00000493456 EID1Q9Y6B2 187 aa27.93■■■□□ 2.06
NUP50-218ENST00000493456 SENP3Q9H4L4 574 aaPredicted RBP27.91■■■□□ 2.06
NUP50-218ENST00000493456 PIK3C2BO00750 1634 aa27.89■■■□□ 2.06
NUP50-218ENST00000493456 TMEM2Q9UHN6 1383 aa27.88■■■□□ 2.05
NUP50-218ENST00000493456 KDM5AP29375 1690 aaKnown RBP27.88■■■□□ 2.05
NUP50-218ENST00000493456 XIRP1Q702N8 1843 aaKnown RBP27.88■■■□□ 2.05
NUP50-218ENST00000493456 ABCC5O15440 1437 aa27.88■■■□□ 2.05
NUP50-218ENST00000493456 KANK1Q14678 1352 aa27.86■■■□□ 2.05
NUP50-218ENST00000493456 PTPN23Q9H3S7 1636 aa27.85■■■□□ 2.05
NUP50-218ENST00000493456 RRP7BPQ9NSQ0 103 aa27.85■■■□□ 2.05
NUP50-218ENST00000493456 EFCAB6Q5THR3 1501 aa27.83■■■□□ 2.05
NUP50-218ENST00000493456 LMTK2Q8IWU2 1503 aa27.83■■■□□ 2.05
NUP50-218ENST00000493456 STAG3Q9UJ98 1225 aa27.83■■■□□ 2.05
NUP50-218ENST00000493456 DAPK1P53355 1430 aa27.83■■■□□ 2.05
NUP50-218ENST00000493456 FAM135BQ49AJ0 1406 aa27.83■■■□□ 2.05
NUP50-218ENST00000493456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.82■■■□□ 2.043e-6■□□□□ 11.3
NUP50-218ENST00000493456 LOC105371045A0A1W2PR82 267 aa27.78■■■□□ 2.04
NUP50-218ENST00000493456 TMEM94Q12767 1356 aa27.77■■■□□ 2.04
NUP50-218ENST00000493456 ANKRD30AQ9BXX3 1397 aa27.76■■■□□ 2.03
NUP50-218ENST00000493456 RGS17Q9UGC6 210 aaPredicted RBP27.76■■■□□ 2.03
NUP50-218ENST00000493456 TET3O43151 1660 aa27.75■■■□□ 2.03
NUP50-218ENST00000493456 KCNA6P17658 529 aa27.75■■■□□ 2.03
NUP50-218ENST00000493456 IDI1Q13907 227 aa27.75■■■□□ 2.03
NUP50-218ENST00000493456 FGD6Q6ZV73 1430 aa27.75■■■□□ 2.03
NUP50-218ENST00000493456 ADGRB3O60242 1522 aa27.73■■■□□ 2.03
NUP50-218ENST00000493456 NKTRP30414 1462 aaKnown RBP27.72■■■□□ 2.03
NUP50-218ENST00000493456 APLP2Q06481 763 aa27.72■■■□□ 2.03
NUP50-218ENST00000493456 NOS1P29475 1434 aa27.72■■■□□ 2.03
NUP50-218ENST00000493456 NWD1Q149M9 1564 aa27.71■■■□□ 2.03
NUP50-218ENST00000493456 ROBO1Q9Y6N7 1651 aa27.71■■■□□ 2.03
NUP50-218ENST00000493456 PROSER2Q86WR7 435 aaPredicted RBP27.68■■■□□ 2.02
NUP50-218ENST00000493456 SLC26A8Q96RN1 970 aa27.67■■■□□ 2.02
NUP50-218ENST00000493456 SLC52A1Q9NWF4 448 aa27.67■■■□□ 2.02
NUP50-218ENST00000493456 CHIC2Q9UKJ5 165 aa27.65■■■□□ 2.02
NUP50-218ENST00000493456 RPRD2Q5VT52 1461 aaKnown RBP27.64■■■□□ 2.02
NUP50-218ENST00000493456 ADGRL2O95490 1459 aa27.64■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms